Browse Element(s) Details


OsAffx.29183.1.S1_at

Description tigr:9636.m01364
TID=OsAffx.29183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1379011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13750NANA8+8188776..8194871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13760OsAffx.21897.5.S1_x_at4/118+8195187..8198127retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13770OsAffx.5806.1.S1_at11/118+8202964..8203628hypothetical protein
LOC_Os08g13780OsAffx.16983.1.S1_at11/118+8210084..8212704U-box domain containing protein
LOC_Os08g13790OsAffx.29183.1.S1_at11/118+8213932..8214414hypothetical protein
LOC_Os08g13800OsAffx.16984.1.S1_at11/118+8223768..8230396NB-ARC domain containing protein
LOC_Os08g13810NANA8+8237408..8241968retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29183.1.S1_at--1014--4231Chr08:8214360..8214384 (25 bp)
CCGTTAGAGATGAGGTTATCCATGA
LOC_Os08g13790
OsAffx.29183.1.S1_at--491--6771Chr08:8214346..8214370 (25 bp)
GTTATCCATGATGAAAAACTTCGAC
LOC_Os08g13790
OsAffx.29183.1.S1_at--1130--2371Chr08:8214331..8214355 (25 bp)
AAACTTCGACTCGTTATCGATGGGC
LOC_Os08g13790
OsAffx.29183.1.S1_at--163--2011Chr08:8214323..8214347 (25 bp)
ACTCGTTATCGATGGGCTGTCACAT
LOC_Os08g13790
OsAffx.29183.1.S1_at--944--511Chr08:8214316..8214340 (25 bp)
ATCGATGGGCTGTCACATATGTGAT
LOC_Os08g13790
OsAffx.29183.1.S1_at--870--7091Chr08:8214305..8214329 (25 bp)
GTCACATATGTGATGACCCACCTAA
LOC_Os08g13790
OsAffx.29183.1.S1_at--986--8671Chr08:8214297..8214321 (25 bp)
TGTGATGACCCACCTAAACCTGGAG
LOC_Os08g13790
OsAffx.29183.1.S1_at--1144--7571Chr08:8214273..8214297 (25 bp)
GGGCTGTGCAGTAACGCGTCTCTTC
LOC_Os08g13790
OsAffx.29183.1.S1_at--382--4731Chr08:8214271..8214295 (25 bp)
GCTGTGCAGTAACGCGTCTCTTCCT
LOC_Os08g13790
OsAffx.29183.1.S1_at--719--8391Chr08:8214122..8214146 (25 bp)
GGCCCGTGCCTAGCCGTGTGAGTTG
LOC_Os08g13790
OsAffx.29183.1.S1_at--650--9451Chr08:8214019..8214043 (25 bp)
TCGGCGGTGCCCCAGTGGTGGCGGT
LOC_Os08g13790
Target Sequence 
CCGTTAGAGATGAGGTTATCCATGATGAAAAACTTCGACTCGTTATCGATGGGCTGTCACATATGTGATGACCCACCTAA
ACCTGGAGGGCTGTGCAGTAACGCGTCTCTTCCTCTCCCCAGCGCCCCAGATCTAGCCCTGCCGCTGCCAGAGCTGACCG
GCGTTTGTGCGGCGGCTAGGACGGCGGTGGTGGGGAGGTGGGAGGCGGAGGTGCGGCGGTGGCGGCCTGAGGCAGCCGGG
CCCGTGCCTAGCCGTGTGAGTTGGGGACGGCTGGAGGTGGTCGGAAGGGCGGAGGGGAGCGGCAAGACGTCGGCGAGGGA
GGCCCTCGGGGGCGGCGGTGCTCGGCGGTGCCCCAGTGGTGGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis