Browse Element(s) Details


OsAffx.6141.1.S1_x_at

Description tigr:9636.m04579
TID=OsAffx.6141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4490011/11hypothetical protein
LOC_Os01g659707/11Transcription factor HBP-1b, putative
LOC_Os06g154801/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44850Os.8789.1.S1_at11/118+28037640..28039445C2 domain-containing protein, putative, expressed
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44880NANA8+28054560..28054832hypothetical protein
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44940OsAffx.17516.1.S1_at11/118+28079882..28080921LOB domain protein 29, putative
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6141.1.S1_x_at--136--4512Chr08:28064221..28064245 (25 bp)
GCCGATGAGGAGACCGCGCTTCTCG
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--193--4912Chr08:28064204..28064228 (25 bp)
GCTTCTCGCCGCAGACGCGCGGGTA
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--687--1791Chr08:28064163..28064187 (25 bp)
ACCCCGATGACGTCGTCAACGGCGG
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--596--4111Chr08:28064132..28064156 (25 bp)
CGCAAACGCGCTGATGAGCGAGGAC
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--341--3291Chr08:28064130..28064154 (25 bp)
CAAACGCGCTGATGAGCGAGGACGA
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--878--4131Chr08:28064124..28064148 (25 bp)
CGCTGATGAGCGAGGACGAGCTCCG
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--110--1592Chr08:28064106..28064130 (25 bp)
AGCTCCGCGTGCTTGTCGACGCCGT
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--881--9292Chr08:28064103..28064127 (25 bp)
TCCGCGTGCTTGTCGACGCCGTGAT
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--553--10812Chr08:28064094..28064118 (25 bp)
TTGTCGACGCCGTGATGATGCACTA
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--980--6293Chr08:28064085..28064105 (21 bp)
GATGATGCACTACGACCAGGTTCTT
LOC_Os08g44900
OsAffx.6141.1.S1_x_at--518--5852Chr08:28063839..28063860 (22 bp)
GACCAGGTTCTTGAGAGCCATCTTG
LOC_Os08g44900
Target Sequence 
GCCGATGAGGAGACCGCGCTTCTCGCCGCAGACGCGCGGGTAGCTCGCCGCCGCCCGCACCCCGATGACGTCGTCAACGG
CGGCGGCGGCGCAAACGCGCTGATGAGCGAGGACGAGCTCCGCGTGCTTGTCGACGCCGTGATGATGCACTACGACCAGG
TTCTTGAGAGCCATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6141.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis