Browse Element(s) Details


Os.18686.1.S1_at

Description gb:AK062315.1
DB_XREF= gi:32972333
TID=Os.18686.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C02, full insert sequence.
FL= gb:AK062315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4493011/11SNARE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44880NANA8+28054560..28054832hypothetical protein
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44940OsAffx.17516.1.S1_at11/118+28079882..28080921LOB domain protein 29, putative
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g44960OsAffx.29664.1.S1_at11/118+28091477..28091887AP2 domain containing protein, expressed
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44980NANA8+28098638..28098910hypothetical protein
LOC_Os08g44990OsAffx.25936.7.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_at6/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.2.S1_x_at5/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.5.S1_x_at1/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18686.1.S1_at--656--10091Chr08:28078051..28078071 (21 bp)
TAGGAGGGACTTCCGCAGCCACAGA
LOC_Os08g44930
Os.18686.1.S1_at--370--6751Chr08:28077986..28078010 (25 bp)
GTTCAGCTTACTCTTCTCAAATTCA
LOC_Os08g44930
Os.18686.1.S1_at--200--8931Chr08:28077949..28077973 (25 bp)
TGACCAAGCTATGGACAGTCTGCAT
LOC_Os08g44930
Os.18686.1.S1_at--478--5651Chr08:28077925..28077948 (24 bp)
GACAGGGTCAGCGTTCTCAAAAGAT
LOC_Os08g44930
Os.18686.1.S1_at--1089--7971Chr08:28076336..28076360 (25 bp)
GGATGCTTCCAGAGGATTTCTATCT
LOC_Os08g44930
Os.18686.1.S1_at--1088--5251Chr08:28076168..28076192 (25 bp)
GAATGGCTACCATGGTGGCTTCTTT
LOC_Os08g44930
Os.18686.1.S1_at--213--10332Chr07:17387414..17387701 (25 bp)
TTTCATTTCTGTCTTCTTCCTTATA
NONE
Os.18686.1.S1_at--531--2731Chr08:28076103..28076127 (25 bp)
AAGAATTGTCTGACTCTGCCTTTCA
LOC_Os08g44930
Os.18686.1.S1_at--289--171Chr08:28076079..28076103 (25 bp)
ATTTTCCTCTTGCTTGCACGTAAAG
LOC_Os08g44930
Os.18686.1.S1_at--79--7031Chr08:28076055..28076079 (25 bp)
GTACATGGCTGACGGTGTTTATCAA
LOC_Os08g44930
Os.18686.1.S1_at--60--10411Chr08:28076029..28076053 (25 bp)
TTTTGTGCACTTGATGACCGAACAT
LOC_Os08g44930
Target Sequence 
TAGGAGGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTT
CTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAAAGATTGACAGGA
GATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGGGTAATGATANTGGATGCTTCCAGAGGATTTC
TATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTC
ATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGNAAGAATTGTCTGACTCTGCCTTTCATTTTCCTCTTGCTTG
CACGTAAAGTACATGGCTGACGGTGTTTATCAAGTTTTGTGCACTTGATGACCGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis