Browse Element(s) Details


OsAffx.17516.1.S1_at

Description tigr:9636.m04584
TID=OsAffx.17516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lob domain protein 29. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4494011/11LOB domain protein 29, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44940OsAffx.17516.1.S1_at11/118+28079882..28080921LOB domain protein 29, putative
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g44960OsAffx.29664.1.S1_at11/118+28091477..28091887AP2 domain containing protein, expressed
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44980NANA8+28098638..28098910hypothetical protein
LOC_Os08g44990OsAffx.25936.7.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_at6/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.2.S1_x_at5/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.5.S1_x_at1/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17516.1.S1_at--846--2051Chr08:28080818..28080842 (25 bp)
ACTTCTGCCATGAGCAAGGTGCTGC
LOC_Os08g44940
OsAffx.17516.1.S1_at--290--2191Chr08:28080793..28080817 (25 bp)
ACACTTTGCCGCTATCCATAAGGTA
LOC_Os08g44940
OsAffx.17516.1.S1_at--852--2331Chr08:28080748..28080772 (25 bp)
AAAGATCCTTATGCATCTCCCTGTT
LOC_Os08g44940
OsAffx.17516.1.S1_at--312--4631Chr08:28080713..28080737 (25 bp)
GCGAGGCTGCAGTGACCATGTCATA
LOC_Os08g44940
OsAffx.17516.1.S1_at--946--9591Chr08:28080693..28080717 (25 bp)
TCATATGAGGCGCAGGCTAGGCTAC
LOC_Os08g44940
OsAffx.17516.1.S1_at--353--4871Chr08:28080678..28080702 (25 bp)
GCTAGGCTACGCGATCCAATATATG
LOC_Os08g44940
OsAffx.17516.1.S1_at--737--10191Chr08:28080659..28080683 (25 bp)
TATATGGTTGTGTCGCGCACATCTT
LOC_Os08g44940
OsAffx.17516.1.S1_at--536--1311Chr08:28080167..28080191 (25 bp)
AGATGGTTGTTCGATCTCAAGCCCT
LOC_Os08g44940
OsAffx.17516.1.S1_at--463--331Chr08:28080035..28080059 (25 bp)
ATACATTGCAAATGGCCACTTGGCC
LOC_Os08g44940
OsAffx.17516.1.S1_at--632--7111Chr08:28080005..28080029 (25 bp)
GTCAGCTCAATCTTCACAAGGCTTT
LOC_Os08g44940
OsAffx.17516.1.S1_at--1125--1691Chr08:28079947..28079971 (25 bp)
ACCAACCCTTGTTGCAGTGTGCAAG
LOC_Os08g44940
Target Sequence 
ACTTCTGCCATGAGCAAGGTGCTGCACACTTTGCCGCTATCCATAAGGTATTTGGGGCAAGTAATGCCTCAAAGATCCTT
ATGCATCTCCCTGTTAGTGACCGCTGCGAGGCTGCAGTGACCATGTCATATGAGGCGCAGGCTAGGCTACGCGATCCAAT
ATATGGTTGTGTCGCGCACATCTTCTCTCTGCAACAGCAGGTAGTCAGTCTGCAAGCACAACTAGAATCTCTCAAAGCTC
AGGCAACACAAGGGTATGGAGATGGTTGTTCGATCTCAAGCCCTCAAAACGATAGCTGTGGAAATATGTTAACGTCTATT
GTGCAAGATGAGCAACAGTTTGTTGGCCCAACAATGGCAAGTAACTCTTCAGTAAAGAATGAGAATCATTCATACATTGC
AAATGGCCACTTGGCCCCTATGTCAGCTCAATCTTCACAAGGCTTTGAAGCAGAGTTGTGCATGGCTGAGTACAGCAACA
CCAACCCTTGTTGCAGTGTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis