Browse Element(s) Details


Os.8522.1.S1_at

Description gb:AK108468.1
DB_XREF= gi:32993677
TID=Os.8522.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E03, full insert sequence.
FL= gb:AK108468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4598011/11toprim domain-containing protein, putative, expressed
LOC_Os08g449301/11SNARE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45960OsAffx.5120.1.S1_x_at11/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45960Os.55740.1.S1_at10/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed
LOC_Os06g45990Os.7619.1.S1_s_at11/116+27874367..27876422CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g46000Os.12811.2.S1_x_at10/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.1.S1_at9/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.2.S1_at1/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010NANA6+27881060..27881350hypothetical protein
LOC_Os06g46020OsAffx.5121.1.S1_at11/116+27883600..27883983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006304biological_processDNA modification
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0003676molecular_functionnucleic acid binding
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8522.1.S1_at--617--8051Chr06:27872685..27872709 (25 bp)
GGAGATGCTTTCTTGTCATATGAAC
LOC_Os06g45980
Os.8522.1.S1_at--572--212Chr06:27872980..27873004 (25 bp)
ATTTGATTTACTCACTCACTGACCG
LOC_Os06g45980
Os.8522.1.S1_at--261--9691Chr06:27872995..27873019 (25 bp)
TCACTGACCGATCGCACAAGGTGGA
LOC_Os06g45980
Os.8522.1.S1_at--778--10771Chr06:27873032..27873056 (25 bp)
TTGATGCTGCACACTACTGGAGACC
LOC_Os06g45980
Os.8522.1.S1_at--660--7551Chr06:27873057..27873081 (25 bp)
GTGGCCAACTTCATATGCTGGAGCT
LOC_Os06g45980
Os.8522.1.S1_at--1107--10331Chr06:27873097..27873121 (25 bp)
TTTTTGCGACAAGACCCTTTGGAGG
LOC_Os06g45980
Os.8522.1.S1_at--1104--10851Chr06:27873115..27873139 (25 bp)
TTGGAGGTCACCTGTCTGCTGCAGA
LOC_Os06g45980
Os.8522.1.S1_at--25--7891Chr06:27873155..27873179 (25 bp)
GGTTAACCTTGTTACATGGCCTACA
LOC_Os06g45980
Os.8522.1.S1_at--102--151Chr06:27873287..27873311 (25 bp)
ATTATGTACTATGCCCTTCCAAAAG
LOC_Os06g45980
Os.8522.1.S1_at--856--5311Chr06:27873324..27873348 (25 bp)
GAAGGGCGTTTATTAATCCATCAGA
LOC_Os06g45980
Os.8522.1.S1_at--403--6271Chr06:27873347..27873371 (25 bp)
GATGTATTTATTCCAGGCTTCCACA
LOC_Os06g45980
Target Sequence 
GGAGATGCTTTCTTGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGT
TGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCG
CACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGT
CAGTATTTTTTTTGCGACAAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTA
CATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGTGCTATGAACAT
ATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGG
GCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTTCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis