Browse Element(s) Details


OsAffx.5120.1.S1_x_at

Description tigr:9634.m04469
TID=OsAffx.5120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4596011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45940Os.49807.1.S1_at11/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45940Os.29851.2.S1_x_at1/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45950NANA6+27829248..27830319Auxin responsive protein, expressed
LOC_Os06g45960OsAffx.5120.1.S1_x_at11/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45960Os.55740.1.S1_at10/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5120.1.S1_x_at--407--5291Chr06:27844316..27844340 (25 bp)
GAATGGGCCATGTCAGAGCTTGTGA
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--960--5291Chr06:27844272..27844296 (25 bp)
GAAGGCGCAAGCACAGATACGACTT
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--1110--2391Chr06:27844174..27844198 (25 bp)
AAACACTAAGACTGCATCCTGTAGC
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--506--10011Chr06:27844153..27844177 (25 bp)
TAGCACCCCTACTTATGCCAAAAGA
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--264--10111Chr06:27844063..27844087 (25 bp)
TATGGGCCATCGGTAGAGACCACAG
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--500--6351Chr06:27844028..27844052 (25 bp)
GATGCGGAAGTATTTTTGCCAAAGC
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--158--391Chr06:27843992..27844016 (25 bp)
ATCACAGTTGATTTTGGAGGCACAA
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--313--211Chr06:27843915..27843939 (25 bp)
ATTTGCACATGCCACACTCGAGTTG
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--296--171Chr06:27843868..27843892 (25 bp)
ATTTTGATTGGCATCTTCCTCCTAG
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--408--431Chr06:27843856..27843880 (25 bp)
ATCTTCCTCCTAGTGTTACACCAGA
LOC_Os06g45960
OsAffx.5120.1.S1_x_at--305--1071Chr06:27843785..27843809 (25 bp)
AGGGATCTTCATCTACATCCAGTAA
LOC_Os06g45960
Target Sequence 
GAATGGGCCATGTCAGAGCTTGTGAAGAATCCTCAAGTGATGCAGAAGGCGCAAGCACAGATACGACTTGCTTTGCAAGG
AAGATCTAGAATAACAGAAGATGACTTGATAAATTTAAGTTACCCAAAGAATATAATCAAGGAAACACTAAGACTGCATC
CTGTAGCACCCCTACTTATGCCAAAAGAGTGTCAAGAGTCATGCAAAATATTAGGATATAACATTCCAAAAGGGTCAATC
ATGTTGGTGAATGTATGGGCCATCGGTAGAGACCACAGATATTGGGATGATGCGGAAGTATTTTTGCCAAAGCGTTTTGA
GGAAATCACAGTTGATTTTGGAGGCACAAACTATGAATTCATACCATTTGGGGGAGGACGGAGAATATGTCCAGGCATAA
CATTTGCACATGCCACACTCGAGTTGGCCCTCACTGCTCTCCTATACCATTTTGATTGGCATCTTCCTCCTAGTGTTACA
CCAGATGGGTTGGACATGGAAGAGGAATTCGGGATGAACGTTCGTAGAAAAAGGGATCTTCATCTACATCCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5120.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis