Browse Element(s) Details


Os.55740.1.S1_at

Description gb:AK108697.1
DB_XREF= gi:32993906
TID=Os.55740.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G09, full insert sequence.
FL= gb:AK108697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4596010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45940Os.49807.1.S1_at11/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45940Os.29851.2.S1_x_at1/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45950NANA6+27829248..27830319Auxin responsive protein, expressed
LOC_Os06g45960OsAffx.5120.1.S1_x_at11/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45960Os.55740.1.S1_at10/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55740.1.S1_at--71--3011Chr06:27843735..27843759 (25 bp)
AATGAGCTAGATATATGGTTAATGT
LOC_Os06g45960
Os.55740.1.S1_at--400--3591Chr06:27843705..27843729 (25 bp)
CATTTTTATAGGTGTGTATCGACTT
LOC_Os06g45960
Os.55740.1.S1_at--438--10191Chr06:27843699..27843723 (25 bp)
TATAGGTGTGTATCGACTTCTTGAA
LOC_Os06g45960
Os.55740.1.S1_at--121--10091Chr06:27843697..27843721 (25 bp)
TAGGTGTGTATCGACTTCTTGAATA
LOC_Os06g45960
Os.55740.1.S1_at--29--7751Chr06:27843695..27843719 (25 bp)
GGTGTGTATCGACTTCTTGAATAAT
LOC_Os06g45960
Os.55740.1.S1_at--933--7431Chr06:27843692..27843716 (25 bp)
GTGTATCGACTTCTTGAATAATCAT
LOC_Os06g45960
Os.55740.1.S1_at--310--9371Chr06:27843687..27843711 (25 bp)
TCGACTTCTTGAATAATCATCCTCA
LOC_Os06g45960
Os.55740.1.S1_at--516--3071Chr06:27843673..27843697 (25 bp)
AATCATCCTCAATAAAGTTGCACGA
LOC_Os06g45960
Os.55740.1.S1_at--206--3731Chr06:27843666..27843690 (25 bp)
CTCAATAAAGTTGCACGACTCTCTT
LOC_Os06g45960
Os.55740.1.S1_at--429--9831Chr06:27843661..27843685 (25 bp)
TAAAGTTGCACGACTCTCTTAAAGC
LOC_Os06g45960
Os.55740.1.S1_at--740--1231Chr06:27843658..27843682 (25 bp)
AGTTGCACGACTCTCTTAAAGCGGT
NONE
Target Sequence 
AATGAGCTAGATATATGGTTAATGTAAGTGCATTTTTATAGGTGTGTATCGACTTCTTGAATAATCATCCTCAATAAAGT
TGCACGACTCTCTTAAAGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis