Browse Element(s) Details


Os.49807.1.S1_at

Description gb:AK111663.1
DB_XREF= gi:37988326
TID=Os.49807.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156F08, full insert sequence.
FL= gb:AK111663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4594011/11potassium uptake protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45910Os.21014.1.S1_at11/116+27791517..27797565cyclophilin-RNA interacting protein, putative, expressed
LOC_Os06g45920OsAffx.28124.1.S1_at11/116+27799910..27801151ZmEBE-1 protein, putative
LOC_Os06g45930OsAffx.29486.2.S1_x_at11/116+27809916..27811167hypothetical protein
LOC_Os06g45940Os.49807.1.S1_at11/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45940Os.29851.2.S1_x_at1/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45950NANA6+27829248..27830319Auxin responsive protein, expressed
LOC_Os06g45960OsAffx.5120.1.S1_x_at11/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45960Os.55740.1.S1_at10/116+27843658..27847258Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49807.1.S1_at--897--7251Chr06:27825772..27825796 (25 bp)
GTCCTCCGGCGGAAGCAATCAGCAC
LOC_Os06g45940
Os.49807.1.S1_at--599--8191Chr06:27825782..27825806 (25 bp)
GGAAGCAATCAGCACGCCTTTGACG
LOC_Os06g45940
Os.49807.1.S1_at--732--1491Chr06:27825792..27825816 (25 bp)
AGCACGCCTTTGACGCCGGGACGAC
LOC_Os06g45940
Os.49807.1.S1_at--252--1871Chr06:27825818..27825842 (25 bp)
ACGAGCTCGTGCGAGATCGACGCCA
LOC_Os06g45940
Os.49807.1.S1_at--1093--8711Chr06:27825960..27825984 (25 bp)
TGTCGTACATGATCGGGCACACGTG
LOC_Os06g45940
Os.49807.1.S1_at--248--2111Chr06:27825966..27825990 (25 bp)
ACATGATCGGGCACACGTGCGTGTT
LOC_Os06g45940
Os.49807.1.S1_at--218--9151Chr06:27825983..27826007 (25 bp)
TGCGTGTTCGCGCACGAGTCATCGT
LOC_Os06g45940
Os.49807.1.S1_at--640--311Chr06:27826095..27826119 (25 bp)
ATACCTCCCTCATCGAGGTCGGCAT
LOC_Os06g45940
Os.49807.1.S1_at--1137--9411Chr06:27826113..27826137 (25 bp)
TCGGCATGGCGTACAGGGTATAGTA
LOC_Os06g45940
Os.49807.1.S1_at--103--6031Chr06:27826197..27826221 (25 bp)
GAGAGTGTAGCATTTCATAGCCTCA
LOC_Os06g45940
Os.49807.1.S1_at--727--4951Chr06:27826206..27826230 (25 bp)
GCATTTCATAGCCTCACTTAGTGTT
LOC_Os06g45940
Target Sequence 
GTCCTCCGGCGGAAGCAATCAGCACGCCTTTGACGCCGGGACGACGACGAGCTCGTGCGAGATCGACGCCACCGCAGGCG
GCGGCGGCAGGAGGAAGGTACGGTTCGACAACGACGGCGGCGGCGGCGGCGAGGAGGAGGAGGAGGCGGCGGAGGTGAAG
GAGCTGATGGAGGAGAAGGAGGCCGGCGTGTCGTACATGATCGGGCACACGTGCGTGTTCGCGCACGAGTCATCGTCGGC
GGTGAAGAAGTTCGCCGTCAACGTGGTGTACGGCTTCCTCCGGCGAAACTCGCGGCGGCCGGCGGTGGTGCTCGGCATCC
CGCATACCTCCCTCATCGAGGTCGGCATGGCGTACAGGGTATAGTAGTGTAGTATATATACTCCGTATATACAACTATAC
GTACATACATACATACATCGCTGAAGAGAGTGTAGCATTTCATAGCCTCACTTAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis