Browse Element(s) Details


Os.7619.1.S1_s_at

Description gb:AU101589
DB_XREF= gi:9865839
DB_XREF=AU101589
CLONE=E61990
TID=Os.7619.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7619 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564360.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4599011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed
LOC_Os06g45990Os.7619.1.S1_s_at11/116+27874367..27876422CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g46000Os.12811.2.S1_x_at10/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.1.S1_at9/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.2.S1_at1/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010NANA6+27881060..27881350hypothetical protein
LOC_Os06g46020OsAffx.5121.1.S1_at11/116+27883600..27883983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7619.1.S1_s_at--858--8591Chr06:27876158..27876182 (25 bp)
TGGTCCTCACCGTCGAGAACCTGAC
LOC_Os06g45990
Os.7619.1.S1_s_at--136--7311Chr06:27876199..27876223 (25 bp)
GTGCTGTTCAGGCACAAGGCCAAGA
LOC_Os06g45990
Os.7619.1.S1_s_at--888--2771Chr06:27876220..27876244 (25 bp)
AAGAGCGCCTGTGCCAAGGAGTGCT
LOC_Os06g45990
Os.7619.1.S1_s_at--46--991Chr06:27876236..27876260 (25 bp)
AGGAGTGCTGAGAATCTGGGCTTTC
LOC_Os06g45990
Os.7619.1.S1_s_at--715--1471Chr06:27876246..27876270 (25 bp)
AGAATCTGGGCTTTCGCTGCTCATT
LOC_Os06g45990
Os.7619.1.S1_s_at--790--10631Chr06:27876258..27876282 (25 bp)
TTCGCTGCTCATTGTGGTGAATTCT
LOC_Os06g45990
Os.7619.1.S1_s_at--522--7771Chr06:27876273..27876297 (25 bp)
GGTGAATTCTTTTGGAGGCTGCTGA
LOC_Os06g45990
Os.7619.1.S1_s_at--377--3831Chr06:27876291..27876315 (25 bp)
CTGCTGAGATGCGTGGATTCGTTCT
LOC_Os06g45990
Os.7619.1.S1_s_at--143--4671Chr06:27876301..27876325 (25 bp)
GCGTGGATTCGTTCTATTCTTTTGT
LOC_Os06g45990
Os.7619.1.S1_s_at--778--6051Chr06:27876366..27876390 (25 bp)
GAGATTGTTTCATTGATTTACCCGA
LOC_Os06g45990
Os.7619.1.S1_s_at--503--6831Chr06:27876372..27876396 (25 bp)
GTTTCATTGATTTACCCGAGAATAT
LOC_Os06g45990
Target Sequence 
TGGTCCTCACCGTCGAGAACCTGACGCACAGGAAGAAGAAGGTGCTGTTCAGGCACAAGGCCAAGAGCGCCTGTGCCAAG
GAGTGCTGAGAATCTGGGCTTTCGCTGCTCATTGTGGTGAATTCTTTTGGAGGCTGCTGAGATGCGTGGATTCGTTCTAT
TCTTTTGTGTGTGTGTGAGAGAGAGAGAGATCATTTTGTTTGTATGTGGAGATTGTTTCATTGATTTACCCGAGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7619.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis