CREP Browser

Description

gb:L33263.1
DB_XREF= gi:508575
TID=Os.12811.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12811 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-tubulin mRNA.
PROD=beta-tubulin
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46000	1/11	Tubulin beta-3 chain, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45970	OsAffx.15943.1.S1_x_at	11/11	6	+	27861250..27861651	Auxin responsive protein, expressed
LOC_Os06g45980	Os.8522.1.S1_at	11/11	6	+	27866664..27873405	toprim domain-containing protein, putative, expressed
LOC_Os06g45990	Os.7619.1.S1_s_at	11/11	6	+	27874367..27876422	CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g46000	Os.12811.2.S1_x_at	10/11	6	+	27876528..27879132	Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000	Os.12811.1.S1_at	9/11	6	+	27876528..27879132	Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000	Os.12811.2.S1_at	1/11	6	+	27876528..27879132	Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010	NA	NA	6	+	27881060..27881350	hypothetical protein
LOC_Os06g46020	OsAffx.5121.1.S1_at	11/11	6	+	27883600..27883983	hypothetical protein
LOC_Os06g46030	Os.52694.1.S1_at	11/11	6	+	27903555..27905637	expressed protein
LOC_Os06g46030	OsAffx.21629.2.S1_x_at	1/11	6	+	27903555..27905637	expressed protein

Gene Ontology Classification

GO id	Type	Name
GO:0007017	biological_process	microtubule-based process
GO:0009409	biological_process	response to cold
GO:0009416	biological_process	response to light stimulus
GO:0009826	biological_process	unidimensional cell growth
GO:0015630	cellular_component	microtubule cytoskeleton
GO:0045298	cellular_component	tubulin
GO:0005198	molecular_function	structural molecule activity
GO:0005200	molecular_function	structural constituent of cytoskeleton

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12811.2.S1_at--534--319	1	Chr06:27877053..27877116 (25 bp)	CAATCCAGGAGATGTGGAAGGCTTT	LOC_Os06g46000
Os.12811.2.S1_at--797--303	1	NONE	AATCCAGGAGATGTGGAAGGCTTTC	NONE
Os.12811.2.S1_at--772--351	1	NONE	CATGAACGACCCTGGCCTGGTAGCT	NONE
Os.12811.2.S1_at--1040--65	1	NONE	ATGAACGACCCTGGCCTGGTAGCTG	NONE
Os.12811.2.S1_at--854--897	1	NONE	TGAACGACCCTGGCCTGGTAGCTGA	NONE
Os.12811.2.S1_at--726--543	1	NONE	GAACGACCCTGGCCTGGTAGCTGAA	NONE
Os.12811.2.S1_at--797--259	1	NONE	AACGACCCTGGCCTGGTAGCTGAAT	NONE
Os.12811.2.S1_at--405--185	1	NONE	ACGACCCTGGCCTGGTAGCTGAATA	NONE

Target Sequence

CAATCCAGGAGATGTGGAAGGCTTTCTTGCACTGGTACACTGGTGAGGGAATGGACGAGATGGAGTTCACCGAGGCTGAG
AGCAACATGAACGACCCTGGCCTGGTAGCTGAATA

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details