Browse Element(s) Details


OsAffx.5121.1.S1_at

Description tigr:9634.m04475
TID=OsAffx.5121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4602011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed
LOC_Os06g45990Os.7619.1.S1_s_at11/116+27874367..27876422CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g46000Os.12811.2.S1_x_at10/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.1.S1_at9/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.2.S1_at1/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010NANA6+27881060..27881350hypothetical protein
LOC_Os06g46020OsAffx.5121.1.S1_at11/116+27883600..27883983hypothetical protein
LOC_Os06g46030Os.52694.1.S1_at11/116+27903555..27905637expressed protein
LOC_Os06g46030OsAffx.21629.2.S1_x_at1/116+27903555..27905637expressed protein
LOC_Os06g46040NANA6+27907808..27908884retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5121.1.S1_at--185--7511Chr06:27883908..27883932 (25 bp)
GTGGCGGCCGCGCTGGTCGCGTCGT
LOC_Os06g46020
OsAffx.5121.1.S1_at--938--8351Chr06:27883870..27883894 (25 bp)
GGCGGACGCGTTCCGCACGTATTTC
LOC_Os06g46020
OsAffx.5121.1.S1_at--271--1891Chr06:27883854..27883878 (25 bp)
ACGTATTTCCCGGAGGACGAGCAGC
LOC_Os06g46020
OsAffx.5121.1.S1_at--224--6871Chr06:27883852..27883876 (25 bp)
GTATTTCCCGGAGGACGAGCAGCTT
LOC_Os06g46020
OsAffx.5121.1.S1_at--517--1851Chr06:27883838..27883862 (25 bp)
ACGAGCAGCTTCTCCGTAACAAGGG
LOC_Os06g46020
OsAffx.5121.1.S1_at--509--5031Chr06:27883834..27883858 (25 bp)
GCAGCTTCTCCGTAACAAGGGTAGC
LOC_Os06g46020
OsAffx.5121.1.S1_at--640--4231Chr06:27883825..27883849 (25 bp)
CCGTAACAAGGGTAGCGGAGCCACG
LOC_Os06g46020
OsAffx.5121.1.S1_at--562--2211Chr06:27883820..27883844 (25 bp)
ACAAGGGTAGCGGAGCCACGGTGGT
LOC_Os06g46020
OsAffx.5121.1.S1_at--941--671Chr06:27883791..27883815 (25 bp)
ATGACGGCGCCGGTACTGTCAGGGA
LOC_Os06g46020
OsAffx.5121.1.S1_at--46--7011Chr06:27883779..27883803 (25 bp)
GTACTGTCAGGGAGCCCGGTCGTCA
LOC_Os06g46020
OsAffx.5121.1.S1_at--264--3931Chr06:27883637..27883661 (25 bp)
CGGCCGGCGTGATCAGCTTGGACTC
LOC_Os06g46020
Target Sequence 
GTGGCGGCCGCGCTGGTCGCGTCGTCGCTGGCGCCGGCGGCGGACGCGTTCCGCACGTATTTCCCGGAGGACGAGCAGCT
TCTCCGTAACAAGGGTAGCGGAGCCACGGTGGTGGTGATGACGGCGCCGGTACTGTCAGGGAGCCCGGTCGTCACACCGG
CCGGCGCGCCCAGCGGCGCCGAGCTCATCGCGTTCGCGGGGCGCGACGACGTCGACGCCGAAGATGGCGCCGGCGACGGC
GACGACGTCTCGCCCGGCCCCGCGCCGTCGTCGGCCGGCGTGATCAGCTTGGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis