Browse Element(s) Details


Os.12811.2.S1_x_at

Description gb:L33263.1
DB_XREF= gi:508575
TID=Os.12811.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12811 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-tubulin mRNA.
PROD=beta-tubulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4600010/11Tubulin beta-3 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed
LOC_Os06g45990Os.7619.1.S1_s_at11/116+27874367..27876422CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g46000Os.12811.2.S1_x_at10/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.1.S1_at9/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.2.S1_at1/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010NANA6+27881060..27881350hypothetical protein
LOC_Os06g46020OsAffx.5121.1.S1_at11/116+27883600..27883983hypothetical protein
LOC_Os06g46030Os.52694.1.S1_at11/116+27903555..27905637expressed protein
LOC_Os06g46030OsAffx.21629.2.S1_x_at1/116+27903555..27905637expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009826biological_processunidimensional cell growth
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12811.2.S1_x_at--47--1691Chr06:27877274..27877298 (25 bp)
AGCCTCAGCCATGTTCCGCGGAAAG
LOC_Os06g46000
Os.12811.2.S1_x_at--545--331Chr06:27877193..27877217 (25 bp)
ATACTTTGTGGAGTGGATCCCTAAC
LOC_Os06g46000
Os.12811.2.S1_x_at--322--6371Chr06:27877178..27877202 (25 bp)
GATCCCTAACAATGTCAAGTCGAGT
LOC_Os06g46000
Os.12811.2.S1_x_at--734--9371Chr06:27877159..27877183 (25 bp)
TCGAGTGTGTGTGACATTCCACCCA
LOC_Os06g46000
Os.12811.2.S1_x_at--389--91Chr06:27877144..27877168 (25 bp)
ATTCCACCCATTGGCCTGAAGATGG
LOC_Os06g46000
Os.12811.2.S1_x_at--331--1971Chr06:27877102..27877125 (24 bp)
ACTCGACCTCAATCCAGGAGATGTG
LOC_Os06g46000
Os.12811.2.S1_x_at--796--2591NONE
AACGACCCTGGCCTGGTAGCTGAAT
NONE
Os.12811.2.S1_x_at--935--9791Chr06:27876871..27876895 (25 bp)
TAAGCCACCTCTCTGCATGTTTGAG
LOC_Os06g46000
Os.12811.2.S1_x_at--1161--6491Chr06:27876839..27876863 (25 bp)
GATATCCCTTGTGACATTTGCTACT
LOC_Os06g46000
Os.12811.2.S1_x_at--397--4851Chr06:27876820..27876844 (25 bp)
GCTACTACTAGTTACCATCGTTGAT
LOC_Os06g46000
Os.12811.2.S1_x_at--584--331Chr06:27876752..27876776 (25 bp)
ATACTATGTTGCCTTGTCGGACTAT
LOC_Os06g46000
Target Sequence 
AGCCTCAGCCATGTTCCGCGGAAAGATGAGCACCAAGGAAGTTGATGAGCAGATGCTGAATGTCCAGAACAAGAACTCGT
CATACTTTGTGGAGTGGATCCCTAACAATGTCAAGTCGAGTGTGTGTGACATTCCACCCATTGGCCTGAAGATGGCATCC
ACATTCATCGGCAACTCGACCTCAATCCAGGAGATGTGGAAGGCTTTCTTGCACTGGTACACTGGTGAGGGAATGGACGA
GATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCCTGGCCTGGTAGCTGAATACCAGCAGTACCAGGATGCCACCG
CTGAGGAAGAGGACTATGAGGAGGAAGAGGAGGACGAGGAGGTTGCTGCCTAAGCCACCTCTCTGCATGTTTGAGCTATA
TAGATATCCCTTGTGACATTTGCTACTACTAGTTACCATCGTTGATTGGGGGTGCTTGTTAGATGCTAGGTTAATGTTAT
TATTTCCAAATACTATGTTGCCTTGTCGGACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12811.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis