Browse Element(s) Details


OsAffx.1820.1.S1_at

Description gb:NM_183605.1
DB_XREF= gi:34894337
TID=OsAffx.1820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g659101/11Apocytochrome F, C-terminal family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0009512cellular_componentcytochrome b6f complex
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1820.1.S1_at--67--1711Chr01:10556981..10557005 (25 bp)
ACCACACGCGTGTTGGGAGGCATCT
NONE
OsAffx.1820.1.S1_at--750--8011Chr01:10556996..10557205 (25 bp)
GGAGGCATCTGCATGCACACGGCTT
NONE
OsAffx.1820.1.S1_at--664--651NONE
ATGCACACGGCTTGGAGCTCGTCGC
NONE
OsAffx.1820.1.S1_at--110--8091Chr01:10557206..10557230 (25 bp)
GGAGCTCGTCGCCATACTGCGTGTC
NONE
OsAffx.1820.1.S1_at--1087--311Chr01:10557219..10557243 (25 bp)
ATACTGCGTGTCCATAGTGTCGTTC
NONE
OsAffx.1820.1.S1_at--442--8711Chr01:10557227..10557251 (25 bp)
TGTCCATAGTGTCGTTCACCGTGGG
NONE
OsAffx.1820.1.S1_at--77--2771Chr01:10557370..10557394 (25 bp)
AAGACGAAGGAGACCACAACGGTGG
NONE
OsAffx.1820.1.S1_at--986--4231Chr01:10557584..10557608 (25 bp)
CCGGAACATCTCTCGGGTTTTGAGG
NONE
OsAffx.1820.1.S1_at--464--5792Chr01:10557623..10557647 (25 bp)
GACGACATCTCGATGCCGGCCGTCG
NONE
OsAffx.1820.1.S1_at--264--1631Chr01:10557684..10557708 (25 bp)
AGCGGCGCGACATGGACTCTAGCCT
NONE
OsAffx.1820.1.S1_at--77--5671Chr01:10557692..10557716 (25 bp)
GACATGGACTCTAGCCTACCGCTGC
NONE
Target Sequence 
ACCACACGCGTGTTGGGAGGCATCTGCATGCACACGGCTTGGAGCTCGTCGCCATACTGCGTGTCCATAGTGTCGTTCAC
CGTGGGGTATAATATCCGCTGCGAGAAGGAGGAGCAGCGCGTGCCCGTCGAGGCGGCCGGAGCGGACGGCGTAGCTGATC
GCCTGCGGGCGGCGGCGGCGCCCGAGCTGAGCTTCACCGCCGCGAAGACGAAGGAGACCACAACGGTGGCGGTGGGAGCC
GCCGCCGCTCGCCGCAGTCTCCGCCAGCCGCCGCGACACCCGGAACATCTCTCGGGTTTTGAGGGGAGCTCGGCCGCCGA
CGACATCTCGATGCCGGCCGTCGGGTGGTGCGGATGGTGGTGGTGCGAGAGGAACGGCGAGCGGCGCGACATGGACTCTA
GCCTACCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis