Browse Element(s) Details


OsAffx.23932.1.S1_at

Description tigr:9629.m06545
TID=OsAffx.23932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6600011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010258biological_processNADH dehydrogenase complex (plastoquinone) assembly
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23932.1.S1_at--1141--4971Chr01:38634396..38634420 (25 bp)
GCAGGGCTGTGGGACTTCGTGGGAG
LOC_Os01g66000
OsAffx.23932.1.S1_at--1106--1431Chr01:38634326..38634350 (25 bp)
AGAAGCACAAGTCGCTGGCCATCTA
LOC_Os01g66000
OsAffx.23932.1.S1_at--103--4311Chr01:38634260..38634284 (25 bp)
GCCTCAGCTACCAGGGCTACTACTT
LOC_Os01g66000
OsAffx.23932.1.S1_at--979--1051Chr01:38634004..38634028 (25 bp)
AGGTGGACTACAGGCTCAGCTTGCT
LOC_Os01g66000
OsAffx.23932.1.S1_at--52--9411Chr01:38633956..38633980 (25 bp)
TCGTCTGGGTCATGGAAGCCAAGGT
LOC_Os01g66000
OsAffx.23932.1.S1_at--40--9631Chr01:38633834..38633971 (25 bp)
TCATGGAAGCCAAGGTTCTCTCCAA
LOC_Os01g66000
OsAffx.23932.1.S1_at--738--8951Chr01:38633779..38633803 (25 bp)
TGACATCCGCCCCAAAGTCAGGGTG
LOC_Os01g66000
OsAffx.23932.1.S1_at--534--3291Chr01:38633767..38633791 (25 bp)
CAAAGTCAGGGTGATCGCGGAATGC
LOC_Os01g66000
OsAffx.23932.1.S1_at--398--3931Chr01:38633666..38633774 (25 bp)
CGGAATGCGGCAACTGGAGGAAATT
LOC_Os01g66000
OsAffx.23932.1.S1_at--696--8151Chr01:38633648..38633672 (25 bp)
GGAAATTTGTGTGGAAGCCGCTGAA
LOC_Os01g66000
OsAffx.23932.1.S1_at--859--5411Chr01:38633635..38633659 (25 bp)
GAAGCCGCTGAAGCAAATCGCGGGC
LOC_Os01g66000
Target Sequence 
GCAGGGCTGTGGGACTTCGTGGGAGGGGACCTGGTGAAGCCGGACATGGGGCGGTGGCTGGACGACGTGGAGAAGCACAA
GTCGCTGGCCATCTACCCGCCGCACGAGGGCGGCTACGAGGGCCGCTACCTCAGCCGCCTCAGCTACCAGGGCTACTACT
TCCTCGACCTCTCCGCCCGCGGCCTCGGCGACCCCGAGACCACCCTCACCAAGATCCACCCCGTCTGCCCGCCGAGCCTC
GGGAGGCAGCCGGTGGCGAGGTGGTACTTCCCGCCGGAGGTGGACTACAGGCTCAGCTTGCTGCACCCGGACGCCAAGGG
CCTCGTCGTCTGGGTCATGGAAGCCAAGGTTCTCTCCAAGGCCGAGCTGCAGTTCCTCGCCATTCTCCCTGACATCCGCC
CCAAAGTCAGGGTGATCGCGGAATGCGGCAACTGGAGGAAATTTGTGTGGAAGCCGCTGAAGCAAATCGCGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis