Browse Element(s) Details


Os.37409.1.S1_at

Description gb:AK058727.1
DB_XREF= gi:32968745
TID=Os.37409.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F06, full insert sequence.
FL= gb:AK058727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6605011/11wound-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein
LOC_Os01g66070OsAffx.23933.1.S1_at11/111+38671259..38671786PHD-finger family protein
LOC_Os01g66080OsAffx.22461.2.S1_x_at8/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66080OsAffx.22461.3.S1_x_at5/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66090NANA1+38678991..38684996retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37409.1.S1_at--817--6231Chr01:38658968..38658992 (25 bp)
GATGGCTACCCTGTTGTAATGCAAA
LOC_Os01g66050
Os.37409.1.S1_at--43--9031Chr01:38658987..38659011 (25 bp)
TGCAAAGCGCACTGATCCAGCAAGT
LOC_Os01g66050
Os.37409.1.S1_at--19--5671Chr01:38659118..38659142 (25 bp)
GACATCAACCGGAACACTGGCGAGA
LOC_Os01g66050
Os.37409.1.S1_at--590--1091Chr01:38659203..38659227 (25 bp)
AGGGCCCCTCTCAGCATGTAGAGAA
LOC_Os01g66050
Os.37409.1.S1_at--476--5511Chr01:38659228..38659252 (25 bp)
GAACAAGCCTCCTAAGCGTGCTGAT
LOC_Os01g66050
Os.37409.1.S1_at--737--1231Chr01:38659258..38659282 (25 bp)
AGTTGAAACCGTGCTTTGTCTCCCG
LOC_Os01g66050
Os.37409.1.S1_at--1016--10531Chr01:38659283..38659307 (25 bp)
TTCTATGACCAACAACCGAGCTGAT
LOC_Os01g66050
Os.37409.1.S1_at--63--671Chr01:38659327..38659351 (25 bp)
ATGAAATTTCAATCCTCCTAGGCGC
LOC_Os01g66050
Os.37409.1.S1_at--969--3691Chr01:38659344..38659368 (25 bp)
CTAGGCGCTTGTCGGATGCTGTAAC
LOC_Os01g66050
Os.37409.1.S1_at--529--6351Chr01:38659387..38659411 (25 bp)
GATGCCATTGGTCCTTCGTAATTTT
LOC_Os01g66050
Os.37409.1.S1_at--901--10191Chr01:38659419..38659443 (25 bp)
TATATAGTTCCTTTTCCAGCCACAG
LOC_Os01g66050
Target Sequence 
GATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATA
CCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACC
GGAACACTGGCGAGATGAANAANAAAAAAANAAAACCAGAATCTGACCTTGTAGATACACAAGCTAACGCCATGAAGGGC
CCCTCTCAGCATGTAGAGAAGAACAAGCCTCCTAAGCGTGCTGATGAGGCAGTTGAAACCGTGCTTTGTCTCCCGTTCTA
TGACCAACAACCGAGCTGATTGTTTTGGTGTATGCATTGATGAAATTTCAATCCTCCTAGGCGCTTGTCGGATGCTGTAA
CAAATACCCTTGTGGAGAGGATGCCATTGGTCCTTCGTAATTTTTATGATCTATATAGTTCCTTTTCCAGCCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis