Browse Element(s) Details


OsAffx.23933.1.S1_at

Description tigr:9629.m06552
TID=OsAffx.23933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PHD-finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6607011/11PHD-finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein
LOC_Os01g66070OsAffx.23933.1.S1_at11/111+38671259..38671786PHD-finger family protein
LOC_Os01g66080OsAffx.22461.2.S1_x_at8/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66080OsAffx.22461.3.S1_x_at5/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66090NANA1+38678991..38684996retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23933.1.S1_at--559--10811Chr01:38671289..38671313 (25 bp)
TTGTCACAGGGCACTCCAGGGAGCT
LOC_Os01g66070
OsAffx.23933.1.S1_at--480--6051Chr01:38671351..38671375 (25 bp)
GAGATTCTTGATATGTGCCCACTCC
LOC_Os01g66070
OsAffx.23933.1.S1_at--1062--2811Chr01:38671388..38671412 (25 bp)
AAGTTCTACCATATCAGGTGCCTAA
LOC_Os01g66070
OsAffx.23933.1.S1_at--255--11Chr01:38671403..38671427 (25 bp)
AGGTGCCTAAGGTACGAACAGATCG
LOC_Os01g66070
OsAffx.23933.1.S1_at--739--1191Chr01:38671452..38671476 (25 bp)
AGTATTGGTATTGCCCATCTTGTCT
LOC_Os01g66070
OsAffx.23933.1.S1_at--961--3551Chr01:38671467..38671491 (25 bp)
CATCTTGTCTCTGTCGAGTTTGCAA
LOC_Os01g66070
OsAffx.23933.1.S1_at--265--5931Chr01:38671508..38671532 (25 bp)
GAGCAGATCATCCTTTGTGATGGTT
LOC_Os01g66070
OsAffx.23933.1.S1_at--937--1051Chr01:38671539..38671563 (25 bp)
AGGGATACCACCTCTATTGCTTGAT
LOC_Os01g66070
OsAffx.23933.1.S1_at--1102--6371Chr01:38671561..38671585 (25 bp)
GATCCCACCATTGACATTAGTGCCT
LOC_Os01g66070
OsAffx.23933.1.S1_at--52--1991Chr01:38671599..38671623 (25 bp)
ACTGCTCGTCCTGCATAGTACAAGA
LOC_Os01g66070
OsAffx.23933.1.S1_at--43--5491Chr01:38671703..38671727 (25 bp)
GAACTTGAAGCTGCCAATGTGCTCA
LOC_Os01g66070
Target Sequence 
TTGTCACAGGGCACTCCAGGGAGCTTTTGTAAGGTGTGCAATGAGGTTGAAAAACCTAACAAGAGATTCTTGATATGTGC
CCACTCCCTCTGTCCATACAAGTTCTACCATATCAGGTGCCTAAGGTACGAACAGATCGCGAGCAGTGAACAACAGGGCA
ACGAGTATTGGTATTGCCCATCTTGTCTCTGTCGAGTTTGCAAAGTCGATAGGGATGATGAGCAGATCATCCTTTGTGAT
GGTTGTGATGAGGGATACCACCTCTATTGCTTGATCCCACCATTGACATTAGTGCCTGAAGGGGAATGGCACTGCTCGTC
CTGCATAGTACAAGAGGAAAAGGAGACGAAGAGGAGGCTCCATGGGAAGGACATTGCCACCAATGTTTCCATGCTCGAGA
CAGATGGCTTTGCTGAACTTGAAGCTGCCAATGTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis