Browse Element(s) Details


OsAffx.11752.1.S1_at

Description tigr:9629.m06551
TID=OsAffx.11752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6606010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein
LOC_Os01g66070OsAffx.23933.1.S1_at11/111+38671259..38671786PHD-finger family protein
LOC_Os01g66080OsAffx.22461.2.S1_x_at8/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66080OsAffx.22461.3.S1_x_at5/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66090NANA1+38678991..38684996retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11752.1.S1_at--77--6671Chr01:38664374..38664398 (25 bp)
GTTGAAGTGAGGCTGCTTGCTCCCT
LOC_Os01g66060
OsAffx.11752.1.S1_at--293--3631Chr01:38664359..38664383 (25 bp)
CTTGCTCCCTTGTTGACGGTGATGT
LOC_Os01g66060
OsAffx.11752.1.S1_at--212--791Chr01:38664338..38664362 (25 bp)
ATGTGGTTCGGAGGTCTGCTCGTAC
LOC_Os01g66060
OsAffx.11752.1.S1_at--919--7171Chr01:38664325..38664349 (25 bp)
GTCTGCTCGTACCTTGGAAACAACA
LOC_Os01g66060
OsAffx.11752.1.S1_at--276--2671Chr01:38664300..38664324 (25 bp)
AAGCGGCGCGGAAGCCCTACTTGGA
LOC_Os01g66060
OsAffx.11752.1.S1_at--213--1051Chr01:38664229..38664253 (25 bp)
AGGTGTGGATGCGATGTCACGCTCA
LOC_Os01g66060
OsAffx.11752.1.S1_at--669--6271Chr01:38664217..38664241 (25 bp)
GATGTCACGCTCAAAAGCCCAAGCT
LOC_Os01g66060
OsAffx.11752.1.S1_at--840--2691Chr01:38664197..38664221 (25 bp)
AAGCTCGCGTCGCAAGCGCATGGCA
LOC_Os01g66060
OsAffx.11752.1.S1_at--1051--7531Chr01:38664151..38664175 (25 bp)
GTGGCTCGATTTCTCGATCTGGATC
LOC_Os01g66060
OsAffx.11752.1.S1_at--891--8011NONE
GGAGGAAGACCCCAGCGAACACAAT
NONE
OsAffx.11752.1.S1_at--722--3471Chr01:38663148..38663172 (25 bp)
CAGGTGATATGGTTGGTCTTCGTGA
LOC_Os01g66060
Target Sequence 
GTTGAAGTGAGGCTGCTTGCTCCCTTGTTGACGGTGATGTGGTTCGGAGGTCTGCTCGTACCTTGGAAACAACAAAGCGG
CGCGGAAGCCCTACTTGGAGAAGGCGATGCAGCATGGACGACGAGAGCTCGACAACACGGCTTGGAGGTGTGGATGCGAT
GTCACGCTCAAAAGCCCAAGCTCGCGTCGCAAGCGCATGGCAGGGAGGCCGAGCTCGCTGGTGGTGGCTCGATTTCTCGA
TCTGGATCTAGGGAGGAAGACCCCAGCGAACACAATCCAGATACAGGTGATATGGTTGGTCTTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis