Browse Element(s) Details


OsAffx.11751.1.S1_at

Description tigr:9629.m06549
TID=OsAffx.11751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6604011/11receptor kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein
LOC_Os01g66070OsAffx.23933.1.S1_at11/111+38671259..38671786PHD-finger family protein
LOC_Os01g66080OsAffx.22461.2.S1_x_at8/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66080OsAffx.22461.3.S1_x_at5/111+38673560..38676645retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11751.1.S1_at--335--4391Chr01:38651857..38651881 (25 bp)
GCCAAGTTGACCGACCACGGGTTCT
LOC_Os01g66040
OsAffx.11751.1.S1_at--734--1911Chr01:38651873..38651897 (25 bp)
ACGGGTTCTACCCGCTGCTTCTGCA
LOC_Os01g66040
OsAffx.11751.1.S1_at--417--4711Chr01:38651917..38651941 (25 bp)
GCGGCCAAGTGCTCAGAGTTCACGT
LOC_Os01g66040
OsAffx.11751.1.S1_at--323--2851Chr01:38651923..38651947 (25 bp)
AAGTGCTCAGAGTTCACGTGCGGGA
LOC_Os01g66040
OsAffx.11751.1.S1_at--556--6751Chr01:38651934..38651958 (25 bp)
GTTCACGTGCGGGAGGCGGCTGTCC
LOC_Os01g66040
OsAffx.11751.1.S1_at--1073--8331Chr01:38651951..38651975 (25 bp)
GGCTGTCCTCCCATGCCGACGTGTT
LOC_Os01g66040
OsAffx.11751.1.S1_at--843--3251Chr01:38652055..38652079 (25 bp)
CAACTGGCGCTGAGCCATGAGTGGT
LOC_Os01g66040
OsAffx.11751.1.S1_at--585--8891Chr01:38652072..38652096 (25 bp)
TGAGTGGTCGACAGACATCCTCGAT
LOC_Os01g66040
OsAffx.11751.1.S1_at--408--7071Chr01:38652172..38652196 (25 bp)
GTCAAGCCCGAGCACTGGCCCACGT
LOC_Os01g66040
OsAffx.11751.1.S1_at--1058--1791Chr01:38652334..38652358 (25 bp)
ACCGCCGCTTCGATCAGAAAGGCTG
LOC_Os01g66040
OsAffx.11751.1.S1_at--595--4131Chr01:38652339..38652363 (25 bp)
CGCTTCGATCAGAAAGGCTGGGAGA
LOC_Os01g66040
Target Sequence 
GCCAAGTTGACCGACCACGGGTTCTACCCGCTGCTTCTGCACCACGGTCATCGTCTCGCGGCGGCCAAGTGCTCAGAGTT
CACGTGCGGGAGGCGGCTGTCCTCCCATGCCGACGTGTTCTGCCTCGGGCTCGTGCTGCTCGAGGTGGTCACCGGGAAGG
TCCCCGTCGACGAGGACGACGACCTGGCGGAGTGGGCGCAACTGGCGCTGAGCCATGAGTGGTCGACAGACATCCTCGAT
GTGGAGATCGTCACCGACCGGGACCGCCACGGCGACATGCTGAGGCTCACCGAGGTCGCCCTACTCTGCACCGCCGTCAA
GCCCGAGCACTGGCCCACGTCCGCCCCTTCCCACCGCCTTGTCCCCACTGCTACCGCCGCTGCTCCCAACCACCTCGTCC
CCATCGCCACAGCCGCCGCTCCCGACCGCCATCGTCGCCGCTCCCCACCACCACCGCAGCTGCTCCCGACCGCCGCCACC
GCCGCTTCGATCAGAAAGGCTGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis