Browse Element(s) Details


Os.32182.1.S1_at

Description gb:AK101962.1
DB_XREF= gi:32987171
TID=Os.32182.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectin methylesterase (P0018C10.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076D13, full insert sequence.
FL= gb:AK105682.1 gb:AK101962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g657908/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32182.1.S1_at--720--2111Chr01:38534249..38534273 (25 bp)
ACATGGCGCTGTACAGGGAGAAGCC
LOC_Os01g65790
Os.32182.1.S1_at--662--1071Chr01:38534235..38534259 (25 bp)
AGGGAGAAGCCCGACGTGCACCACG
LOC_Os01g65790
Os.32182.1.S1_at--336--8091Chr01:38534005..38534029 (25 bp)
GGACCACGTCGACGTGTACAGCGTC
LOC_Os01g65790
Os.32182.1.S1_at--216--4911Chr01:38533976..38534000 (25 bp)
GCTTCATACAGGGTGACAAGTGGAT
LOC_Os01g65790
Os.32182.1.S1_at--935--1051Chr01:38533958..38533982 (25 bp)
AGTGGATACCCAAAATACATTAGTT
LOC_Os01g65790
Os.32182.1.S1_at--967--8611Chr01:38533910..38533934 (25 bp)
TGGTGGTCCATTGTGTGATCCCCTC
LOC_Os01g65790
Os.32182.1.S1_at--674--6371Chr01:38533894..38533918 (25 bp)
GATCCCCTCGAATGAGATGGTGCCA
LOC_Os01g65790
Os.32182.1.S1_at--394--4131Chr01:38533833..38533857 (25 bp)
CGCATTGTGCCGTGCATAATGTTTA
LOC_Os01g65790
Os.32182.1.S1_at--408--7711Chr01:38533801..38533825 (25 bp)
GGTGGCCAAAGCCTTTTCCTTGATC
NONE
Os.32182.1.S1_at--1113--6411Chr01:38533763..38533787 (25 bp)
GATCTAGTGCTAGCCGACCGTGAAC
NONE
Os.32182.1.S1_at--206--5831NONE
GACCGTGAACGTGAAGGCTCAATCT
NONE
Target Sequence 
ACATGGCGCTGTACAGGGAGAAGCCCGACGTGCACCACGTCTACCTGGGCCGGCCCTGGAAGGAGTACTCGCGCACGGTG
TACGTCGGCTGCACGCTCTCCGAGATCGTGCAGCCGCGCGGGTGGATGGCGTGGAACGGCGACTTCGCGCTCAAGACGCT
CTACTACGGCGAGTACGAGAGCGCCGGCCCCGGCGGCGACGGCGCCAGCGGGAGCAGGATCGGGTGGAGCAGCCAGGTGC
CCAGGGACCACGTCGACGTGTACAGCGTCGNCAGCTTCATACAGGGTGACAAGTGGATACCCAAAATACATTAGTTAGAG
CAGCATAAAAAGAAGTAAATGGTGGTCCATTGTGTGATCCCCTCGAATGAGATGGTGCCAAACTGCCAACGGCNTATAGC
CATTTAACTGTGCAANCGCATTGTGCCGTGCATAATGTTTAATGAAAGGGTGGCCAAAGCCTTTTCCTTGATCNATGAGG
ATGTATGATCTAGTGCTAGCCGACCGTGAACGTGAAGGCTCAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis