Browse Element(s) Details


Os.34112.1.S1_at

Description gb:AK072787.1
DB_XREF= gi:32982810
TID=Os.34112.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.27 (P0471B04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143L14, full insert sequence.
FL= gb:AK072787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1553011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g6576011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g127003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g126902/11Indole-3-acetate beta-glucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15490OsAffx.19689.1.S1_at11/1112+8843464..8843865hypothetical protein
LOC_Os12g15500NANA12+8846627..8848388retrotransposon protein, putative, LINE subclass
LOC_Os12g15510OsAffx.31754.1.S1_x_at11/1112+8853707..8855107hypothetical protein
LOC_Os12g15520Os.54597.1.S1_x_at11/1112+8856763..8858062expressed protein
LOC_Os12g15530Os.34112.1.S1_at11/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.19698.1.S1_at3/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.7606.1.S1_at1/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15540OsAffx.19690.1.S1_at10/1112+8877465..8877714hypothetical protein
LOC_Os12g15550Os.54398.1.S1_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15550Os.54398.1.S1_x_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15560NANA12+8893439..8893989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15570NANA12+8895019..8899712retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34112.1.S1_at--920--7313Chr12:8870723..8870747 (25 bp)
GTGCTACTACTGTCAAGAACTTGGA
LOC_Os12g15530
Os.34112.1.S1_at--518--5633Chr12:8870746..8870770 (25 bp)
GACACTTTGCGTATGAGTGCCCTGA
LOC_Os12g15530
Os.34112.1.S1_at--1116--2913Chr12:8870784..8870808 (25 bp)
AAGGAGATAGCGCTCCTTGCCGCAG
LOC_Os12g15530
Os.34112.1.S1_at--280--713Chr12:8870818..8870842 (25 bp)
ATGAGGAGCCAACTCTTCTCTGAAT
LOC_Os12g15530
Os.34112.1.S1_at--461--2916Chr12:8870949..8870973 (25 bp)
AAGGATCCGAGCCAGTACGTGTGAA
LOC_Os12g15530
Os.34112.1.S1_at--284--2397Chr12:8870972..8870996 (25 bp)
AAACGTGCTTGCTGTGAGCTGTGCG
LOC_Os12g15530
Os.34112.1.S1_at--581--5797Chr12:8871006..8871030 (25 bp)
GACGAACGTGCCGATATCTACGATG
LOC_Os12g15530
Os.34112.1.S1_at--496--6557Chr12:8871065..8871089 (25 bp)
GATTAGCGGCTGCATGCAAGCATTT
LOC_Os12g15530
Os.34112.1.S1_at--767--7158Chr12:8871168..8871192 (25 bp)
GTCTAGCTAGTTACCTTGTTGCATG
LOC_Os12g15530
Os.34112.1.S1_at--736--8814Chr12:8871184..8871208 (25 bp)
TGTTGCATGGCATCTGCATGTTGGA
LOC_Os12g15530
Os.34112.1.S1_at--237--10459Chr12:8871232..8871256 (25 bp)
TTAGTTGGCTGATCCTTATCTTTTG
LOC_Os12g15530
Target Sequence 
GTGCTACTACTGTCAAGAACTTGGACACTTTGCGTATGAGTGCCCTGAGAAAAAGAAGAAGAAGGAGATAGCGCTCCTTG
CCGCAGCGTCAAGTGATGAGGAGCCAACTCTTCTCTGAATGAAGCATGCCAAGATTAGGGGGGTAAATGTTAGCAATAAT
CTTGTCTTTAGAGTGTATGCATTTGGTTTGTATAGGTTTTGCACAAGGTAGTAGTGTGTGGCAGCAAAGGATCCGAGCCA
GTACGTGTGAAACGTGCTTGCTGTGAGCTGTGCGATGCGGCCGGACGAACGTGCCGATATCTACGATGTGTAAAGGCTGT
TGCATTAGCATGTAGAACTAGTGATTAGCGGCTGCATGCAAGCATTTAGTTGGATGTGTTAAGATGCATGCAGAGCTGCA
GCTCAAGCTGGAAGGCCACGAAGTGATTTTGTGGCGGAAGAATAGGTCTAGCTAGTTACCTTGTTGCATGGCATCTGCAT
GTTGGAGTAAGGCGTGAGTCAAGGCCAAATTAGTTGGCTGATCCTTATCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis