Browse Element(s) Details


OsAffx.7606.1.S1_at

Description tigr:9640.m01526
TID=OsAffx.7606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1568011/11Multicopper oxidase family protein, expressed
LOC_Os12g155301/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15650NANA12+8929226..8933644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15660NANA12+8939156..8940852hypothetical protein
LOC_Os12g15670Os.49767.1.S1_x_at1/1112+8947495..8955181retrotransposon protein, putative, unclassified, expressed
LOC_Os12g15670Os.46012.3.S1_x_at1/1112+8947495..8955181retrotransposon protein, putative, unclassified, expressed
LOC_Os12g15680OsAffx.7606.1.S1_at11/1112+8958256..8961411Multicopper oxidase family protein, expressed
LOC_Os12g15680Os.17659.1.S1_at11/1112+8958256..8961411Multicopper oxidase family protein, expressed
LOC_Os12g15690NANA12+8963451..8965639retrotransposon protein, putative, unclassified
LOC_Os12g15700NANA12+8966809..8972221retrotransposon protein, putative, unclassified
LOC_Os12g15720OsAffx.30013.1.S1_x_at5/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.3.S1_x_at5/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.2.S1_at4/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.3.S1_at3/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.4.S1_at2/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15730OsAffx.8371.1.S1_at2/1112+8983519..8985508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15730OsAffx.8372.1.S1_at2/1112+8983519..8985508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15740NANA12+8985726..8986406transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7606.1.S1_at--948--6831Chr12:8959935..8959959 (25 bp)
GTTTCTCTCCAATATGACGGCGCTG
LOC_Os12g15680
OsAffx.7606.1.S1_at--937--791Chr12:8960014..8960038 (25 bp)
ATGGGAGACACCTTCTGCGGACCGG
LOC_Os12g15680
OsAffx.7606.1.S1_at--864--5771Chr12:8960043..8960067 (25 bp)
GACGATGTGCATGCCAGACGACAAA
LOC_Os12g15680
OsAffx.7606.1.S1_at--676--5791Chr12:8960059..8960083 (25 bp)
GACGACAAAGGGACCATCTTCGCGT
LOC_Os12g15680
OsAffx.7606.1.S1_at--694--1731Chr12:8960071..8960095 (25 bp)
ACCATCTTCGCGTCGAGCATGAACA
LOC_Os12g15680
OsAffx.7606.1.S1_at--258--891Chr12:8960135..8960159 (25 bp)
AGGCCATGTACAAGGGCTCCATCGA
LOC_Os12g15680
OsAffx.7606.1.S1_at--3--2171Chr12:8960210..8960234 (25 bp)
ACACCGCTGACGCATCGGACGATAA
LOC_Os12g15680
OsAffx.7606.1.S1_at--359--351Chr12:8960231..8960255 (25 bp)
ATAACGCGACGCTGAAGCACACGTT
LOC_Os12g15680
OsAffx.7606.1.S1_at--886--1411Chr12:8960246..8960270 (25 bp)
AGCACACGTTCAAGTCGACCAAGGT
LOC_Os12g15680
OsAffx.7606.1.S1_at--740--8612Chr12:8960324..8960348 (25 bp)
TGGTGTCCAAGGAGAGCCACCCGAT
LOC_Os12g15680
OsAffx.7606.1.S1_at--623--9711Chr12:8960363..8960387 (25 bp)
TCAACTTCTTCGTCCTCGCACAGGG
LOC_Os12g15680
Target Sequence 
GTTTCTCTCCAATATGACGGCGCTGGTGCCGAACCGTGTGCCGCTCGCCGTCGACACCCACATGTTCGTCACCGTCTCCA
TGGGAGACACCTTCTGCGGACCGGAGCAGACGATGTGCATGCCAGACGACAAAGGGACCATCTTCGCGTCGAGCATGAAC
AACGCCTCCTTCATCCTCCCGAACACAACCTCCATGCTCGAGGCCATGTACAAGGGCTCCATCGACGGCGTCTACACCCG
CGACTTCCCCGACACGCCGCCGATCGTCTTCGACTACACCGCTGACGCATCGGACGATAACGCGACGCTGAAGCACACGT
TCAAGTCGACCAAGGTGAAGACGCTCAAGTACAACTCGACGGTGCAGATGGTGCTGCAGAACACGAGGCTGGTGTCCAAG
GAGAGCCACCCGATGCACCTCCATGGCTTCAACTTCTTCGTCCTCGCACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis