Browse Element(s) Details


OsAffx.30013.4.S1_at

Description tigr:9629.m03032
TID=OsAffx.30013.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3247011/11Zinc knuckle family protein
LOC_Os12g157202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g260401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein
LOC_Os01g32450NANA1+18122729..18123040hypothetical protein
LOC_Os01g32460Os.45928.1.S1_at11/111+18125112..18125866expressed protein
LOC_Os01g32470OsAffx.30013.4.S1_at11/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.2.S1_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.1.S1_x_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32480OsAffx.11284.2.S1_s_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32480OsAffx.11284.2.S1_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32490OsAffx.20020.1.S1_x_at1/111+18144621..18145564hypothetical protein
LOC_Os01g32500Os.20851.1.A1_x_at2/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32500Os.55580.1.S1_at1/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32510OsAffx.8916.1.S1_x_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.8916.1.S1_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_at2/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.2.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.15536.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.26939.1.S1_at1/111+18154010..18158473transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30013.4.S1_at--495--2411Chr01:18130523..18130547 (25 bp)
AAAAAGCAAAGGCTAATGCAGTGAC
LOC_Os01g32470
OsAffx.30013.4.S1_at--230--9053Chr06:28538359..28538458 (24 bp)
TGCAGTGACTTCTTCAAATGACTCA
NONE
OsAffx.30013.4.S1_at--96--5034Chr12:8976000..8976023 (24 bp)
GCAGTGACTTCTTCAAATGACTCAG
LOC_Os12g15720
OsAffx.30013.4.S1_at--700--3453Chr12:8976000..8976024 (25 bp)
CAGTGACTTCTTCAAATGACTCAGA
LOC_Os12g15720
OsAffx.30013.4.S1_at--17--2291Chr01:18130492..18130516 (25 bp)
AAATGACTCAGATAGTGATGGTTGT
LOC_Os01g32470
OsAffx.30013.4.S1_at--112--6432Chr02:15280254..15280290 (25 bp)
GATCTTCTCACAATGTCAAGGGATG
LOC_Os02g26040
OsAffx.30013.4.S1_at--443--9571Chr01:18130345..18130489 (25 bp)
TCTTCTCACAATGTCAAGGGATGAC
LOC_Os01g32470
OsAffx.30013.4.S1_at--223--1071Chr01:18130329..18130352 (24 bp)
AGGGATGACATAAGTTATCCGGCCG
LOC_Os01g32470
OsAffx.30013.4.S1_at--297--8051Chr01:18130147..18130171 (25 bp)
GGAGATCATGATGGGCAAGACAACT
LOC_Os01g32470
OsAffx.30013.4.S1_at--80--411Chr01:18130143..18130167 (25 bp)
ATCATGATGGGCAAGACAACTGTGA
LOC_Os01g32470
OsAffx.30013.4.S1_at--909--8871Chr01:18130139..18130163 (25 bp)
TGATGGGCAAGACAACTGTGATGAC
LOC_Os01g32470
Target Sequence 
AAAAAGCAAAGGCTAATGCAGTGACTTCTTCAAATGACTCAGATAGTGATGGTTGTGATCTTCTCACAATGTCAAGGGAT
GACATAAGTTATCCGGCCGTGAGAGTAGGTGAAGTCAAAATCAAGCTAGAAGATGGAGGCGAACATATTCTTCAGGGAGT
CAGGCATGTAGCAGGGCTAAAAAGGAATCTGATTTCGCTTGGAACCTTGCATAAAGATGGGTTAATATTCCACGGAAATC
GGAATAGGAAGACCATGGAGATCATGATGGGCAAGACAACTGTGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30013.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis