Browse Element(s) Details


Os.45928.1.S1_at

Description gb:AK120501.1
DB_XREF= gi:37990124
TID=Os.45928.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.45928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.7 (P0455H0310.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122F14, full insert sequence.
FL= gb:AK120501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3246011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein
LOC_Os01g32450NANA1+18122729..18123040hypothetical protein
LOC_Os01g32460Os.45928.1.S1_at11/111+18125112..18125866expressed protein
LOC_Os01g32470OsAffx.30013.4.S1_at11/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.2.S1_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.1.S1_x_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32480OsAffx.11284.2.S1_s_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32480OsAffx.11284.2.S1_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32490OsAffx.20020.1.S1_x_at1/111+18144621..18145564hypothetical protein
LOC_Os01g32500Os.20851.1.A1_x_at2/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32500Os.55580.1.S1_at1/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45928.1.S1_at--419--3991Chr01:18125283..18125307 (25 bp)
CGTGGCCAACGTTCGGGCCCTGAGA
LOC_Os01g32460
Os.45928.1.S1_at--1143--1311Chr01:18125423..18125447 (25 bp)
AGATGGCGGTCTTCGAGTGCGGCGG
LOC_Os01g32460
Os.45928.1.S1_at--262--5771Chr01:18125625..18125649 (25 bp)
GACGATGCCCGACTCGAATTGACGG
LOC_Os01g32460
Os.45928.1.S1_at--654--4071Chr01:18125634..18125658 (25 bp)
CGACTCGAATTGACGGCCGGCCGGC
LOC_Os01g32460
Os.45928.1.S1_at--400--3851Chr01:18125666..18125690 (25 bp)
CTGACCCTGACACCGATGATGTTCT
LOC_Os01g32460
Os.45928.1.S1_at--1011--5631Chr01:18125674..18125698 (25 bp)
GACACCGATGATGTTCTTGTGTACG
LOC_Os01g32460
Os.45928.1.S1_at--1092--6731Chr01:18125686..18125710 (25 bp)
GTTCTTGTGTACGTACGTGTGCAAT
LOC_Os01g32460
Os.45928.1.S1_at--103--6991Chr01:18125694..18125718 (25 bp)
GTACGTACGTGTGCAATATCTTTCA
LOC_Os01g32460
Os.45928.1.S1_at--499--7351Chr01:18125704..18125728 (25 bp)
GTGCAATATCTTTCATGCTCTGCTC
LOC_Os01g32460
Os.45928.1.S1_at--518--9611Chr01:18125716..18125740 (25 bp)
TCATGCTCTGCTCCGGTGATATATA
LOC_Os01g32460
Os.45928.1.S1_at--415--9491Chr01:18125722..18125746 (25 bp)
TCTGCTCCGGTGATATATATTTGTG
LOC_Os01g32460
Target Sequence 
CGTGGCCAACGTTCGGGCCCTGAGAGCCATGTTCAAGGAGGCAGCGCTGCCCAGCTGCCGCNAAGACGACGTTAGCGGTG
GCGGTGGCGGGGAGCAGCGCCAGAAGAGGCCGAGGGCGGCGCCGTGGCGGCCGGCGTTCGAGATGGCGGTCTTCGAGTGC
GGCGGCGGCGGCGGCACTACCACCGACGACATCGAGGCGGCGACGACCAAGGGCCAGGACGGCAACTGCAAGAAGGGGAA
GAGGAGCGAGGCGAACGCAGCTGCAGAGGAGGACAAAGGCGAAGTTATCGAGGGGAAACCAGTCGCCATCGCCATCGTCG
CTGACGGGCCTGNNNNNNNGACGACGATGCCCGACTCGAATTGACGGCCGGCCGGCCCTGACCCTGACCCTGACACCGAT
GATGTTCTTGTGTACGTACGTGTGCAATATCTTTCATGCTCTGCTCCGGTGATATATATTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis