Browse Element(s) Details


OsAffx.26939.1.S1_at

Description tigr:9633.m01610
TID=OsAffx.26939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g432701/11retrotransposon protein, putative, unclassified
LOC_Os01g325101/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43194Os.2325.1.S1_at11/112+26028467..26035553aldehyde dehydrogenase family protein, expressed
LOC_Os02g43210OsAffx.12471.1.S1_at11/112+26036491..26037270hypothetical protein
LOC_Os02g43220NANA2+26040156..26040812polyamine oxidase, putative
LOC_Os02g43230OsAffx.12472.1.S1_at11/112+26041700..26042164hypothetical protein
LOC_Os02g43240NANA2+26043475..26044888hypothetical protein
LOC_Os02g43250Os.56206.1.S1_at11/112+26046964..26048295Leucine Rich Repeat family protein, expressed
LOC_Os02g43260OsAffx.20387.1.S1_x_at3/112+26051049..26056208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43280Os.10493.1.S1_at11/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.52279.1.S1_at10/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_s_at8/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_x_at5/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43290Os.18692.1.S1_at11/112+26084581..26086052Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26939.1.S1_at--858--7631Chr05:10296631..10296655 (25 bp)
GGGAGCATAGCCTCTAAGCCATACA
NONE
OsAffx.26939.1.S1_at--1107--4951Chr05:10296627..10296651 (25 bp)
GCATAGCCTCTAAGCCATACACGAG
NONE
OsAffx.26939.1.S1_at--1130--1674Chr12:4354095..4354118 (24 bp)
AGCCTCTAAGCCATACACGAGGAAG
NONE
OsAffx.26939.1.S1_at--667--8752Chr05:10296472..10296495 (24 bp)
TGTACTATGCCATTTGCCCTTTTGA
NONE
OsAffx.26939.1.S1_at--1057--571Chr05:10296466..10296490 (25 bp)
ATGCCATTTGCCCTTTTGACCTGTC
NONE
OsAffx.26939.1.S1_at--718--10394Chr12:12812166..12812185 (20 bp)
TTTTGACCTGTCCATTGCTCTAAGG
NONE
OsAffx.26939.1.S1_at--574--8934Chr09:16918416..16918439 (24 bp)
TGACCTGTCCATTGCTCTAAGGGTG
NONE
OsAffx.26939.1.S1_at--993--98111Chr12:4354423..4354447 (25 bp)
TAAACTTGATGGCATTGTCGGCCTT
NONE
OsAffx.26939.1.S1_at--1060--9451Chr05:10296277..10296301 (25 bp)
TCGGCCTTGATTTCTCCAATGGGCG
NONE
OsAffx.26939.1.S1_at--515--6531Chr05:10296269..10296293 (25 bp)
GATTTCTCCAATGGGCGTCGCTTCA
NONE
OsAffx.26939.1.S1_at--926--91918Chr12:12812361..12812380 (20 bp)
TCCAATGGGCGTCGCTTCAATCCAC
NONE
Target Sequence 
GGGAGCATAGCCTCTAAGCCATACACGAGGAAGAAGGGTGTCTCCTTATTGGATGTTGTCGGTGTGTACTATGCCATTTG
CCCTTTTGACCTGTCCATTGCTCTAAGGGTGAGAAACCGAGGCAAAGCAAATCTTGACTCCCAATCCAATGCAGTAATCC
TGGAAGTCGGCACTGATGAACTGGGAGCCATTGTCTGTTATAATGCGGTGAGGCAATCCGTATCTGCAGAATATCCCTTT
GATAAACTTGATGGCATTGTCGGCCTTGATTTCTCCAATGGGCGTCGCTTCAATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis