Browse Element(s) Details


Os.2325.1.S1_at

Description gb:AF148877.1
DB_XREF= gi:4973430
TID=Os.2325.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2325 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. indica putative aldehyde dehydrogenase OS-ALDH mRNA, complete cds.
PROD=putative aldehyde dehydrogenase OS-ALDH
FL= gb:AF148877.1 gb:AK070741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4319411/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43160NANA2+26015629..26016090hypothetical protein
LOC_Os02g43170Os.53236.1.S1_at11/112+26021916..26023607B-box zinc finger family protein, expressed
LOC_Os02g43180Os.7703.1.S1_at11/112+26025639..26028031Glutaredoxin family protein, expressed
LOC_Os02g43194Os.2325.1.S1_at11/112+26028467..26035553aldehyde dehydrogenase family protein, expressed
LOC_Os02g43210OsAffx.12471.1.S1_at11/112+26036491..26037270hypothetical protein
LOC_Os02g43220NANA2+26040156..26040812polyamine oxidase, putative
LOC_Os02g43230OsAffx.12472.1.S1_at11/112+26041700..26042164hypothetical protein
LOC_Os02g43240NANA2+26043475..26044888hypothetical protein
LOC_Os02g43250Os.56206.1.S1_at11/112+26046964..26048295Leucine Rich Repeat family protein, expressed
LOC_Os02g43260OsAffx.20387.1.S1_x_at3/112+26051049..26056208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009536cellular_componentplastid
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2325.1.S1_at--481--1531Chr02:26031087..26031111 (25 bp)
AGCGGATCGTCGCAGAAACGTCCTC
LOC_Os02g43194
Os.2325.1.S1_at--781--6751Chr02:26031053..26031074 (22 bp)
GTTCAACGACGCGATTGTGCAGTAC
LOC_Os02g43194
Os.2325.1.S1_at--865--8011Chr02:26028814..26028838 (25 bp)
GGAGGAGCCTCCTGGTCGAGTTCAT
LOC_Os02g43194
Os.2325.1.S1_at--474--6471Chr02:26028784..26028808 (25 bp)
GATACCCGCCTTGGGACGAGTACAA
LOC_Os02g43194
Os.2325.1.S1_at--306--8811Chr02:26028751..26028775 (25 bp)
TGTTGCGCCGCGTCTTCAGGTTCGA
LOC_Os02g43194
Os.2325.1.S1_at--1103--9631Chr02:26028736..26028760 (25 bp)
TCAGGTTCGACTACGTCTCGCTCGT
LOC_Os02g43194
Os.2325.1.S1_at--326--8491Chr02:26028692..26028716 (25 bp)
TGGCTGCTCGGCATAAGGCGATGAA
LOC_Os02g43194
Os.2325.1.S1_at--541--6392Chr03:31342673..31342941 (25 bp)
GATCGATCAATCGTCTGCAGTGTTG
NONE
Os.2325.1.S1_at--1046--2291Chr02:26028634..26028658 (25 bp)
AAATGTGTGATCGTCGTGCCATGCG
LOC_Os02g43194
Os.2325.1.S1_at--487--2531Chr02:26028514..26028538 (25 bp)
AACTACCTGTTAGTGCATTGCAATA
LOC_Os02g43194
Os.2325.1.S1_at--1015--6851Chr02:26028477..26028501 (25 bp)
GTTTGATCATCCAATACATTCCGAT
LOC_Os02g43194
Target Sequence 
AGCGGATCGTCGCAGAAACGTCCTCCGGGAGCGTCTTGTTCAACGACGCGATTGTGCAGTACGGGCTGGACAGCGTCCCG
TTCGGCGGGATCGGGGAGAGCGGGTTCGGGCAGTACCACGGCAAGTACACGTTCGAGCTGTTCAGCCACAGGAAGGCGGT
GGTCAGGAGGAGCCTCCTGGTCGAGTTCATGTTCAGATACCCGCCTTGGGACGAGTACAAGATGGGGATGTTGCGCCGCG
TCTTCAGGTTCGACTACGTCTCGCTCGTGCTTGCGCTGCTCGCCTTTTGGCTGCTCGGCATAAGGCGATGAAGGATCGAT
CAATCGTCTGCAGTGTTGGTTCATAAAATGTGTGATCGTCGTGCCATGCGGCCAATGCACATGCCGGGGACACTATTTTA
TGTGATATTTATGTATTTATTTCCAAGAAACGTGCTTGCAGTTACTAAATAAACTCAAAAAATATAACTACCTGTTAGTG
CATTGCAATATTGTATCAAACAGTTTGATCATCCAATACATTCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis