Browse Element(s) Details


OsAffx.19035.1.S1_x_at

Description tigr:9639.m02425
TID=OsAffx.19035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2709011/11hypothetical protein
LOC_Os01g325101/11transposon protein, putative, unclassified
LOC_Os12g286201/11retrotransposon protein, putative, unclassified
LOC_Os04g161901/11hypothetical protein
LOC_Os06g312401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27030OsAffx.19034.1.S1_at11/1111+15064273..15064782MATH domain containing protein
LOC_Os11g27040NANA11+15069137..15070363hypothetical protein
LOC_Os11g27050OsAffx.20329.1.S1_at5/1111+15070712..15075628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27060NANA11+15081191..15083908retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27070NANA11+15084545..15085688transposon protein, putative, unclassified
LOC_Os11g27080NANA11+15086186..15086955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27090OsAffx.19035.1.S1_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.19035.1.S1_x_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_at2/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_x_at1/1111+15087873..15090846hypothetical protein
LOC_Os11g27100NANA11+15094103..15096252retrotransposon, putative, centromere-specific
LOC_Os11g27110NANA11+15098616..15099968expressed protein
LOC_Os11g27120OsAffx.7215.1.S1_at11/1111+15100933..15101315hypothetical protein
LOC_Os11g27130OsAffx.31156.1.S1_at11/1111+15110974..15111707hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19035.1.S1_x_at--733--5112Chr12:16920194..16920354 (25 bp)
GCACTTGCGCTTGAGCCGGAGAAGA
LOC_Os12g28620
OsAffx.19035.1.S1_x_at--1015--5351Chr11:15088398..15088422 (25 bp)
GAAGAACCTGACTCAGTCCTTTCCG
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--729--3853Chr06:18173490..18173513 (24 bp)
CTGACTCAGTCCTTTCCGTGTTGGG
LOC_Os06g31240
OsAffx.19035.1.S1_x_at--85--5411Chr11:15088250..15088274 (25 bp)
GAAGCTCTCAGAGGTCGCGAGGTAT
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--139--3852Chr11:15088200..15088224 (25 bp)
CTGCACGGCAATGGCTGGAGTCTGC
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--977--4711Chr11:15088187..15088211 (25 bp)
GCTGGAGTCTGCAGGAAACTCCGAG
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--201--7511Chr11:15088119..15088143 (25 bp)
GTGGTTGAATAGGACCTGCACACAG
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--51--10751Chr11:15088115..15088139 (25 bp)
TTGAATAGGACCTGCACACAGCTCG
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--280--5131Chr11:15088102..15088126 (25 bp)
GCACACAGCTCGAAGGGATCGGTAA
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--78--4231Chr11:15087934..15087958 (25 bp)
CCGCAGAGATTGACGATCAGGCACA
LOC_Os11g27090
OsAffx.19035.1.S1_x_at--1096--6431Chr11:15087920..15087944 (25 bp)
GATCAGGCACAGTCAATGGCGCCGC
LOC_Os11g27090
Target Sequence 
GCACTTGCGCTTGAGCCGGAGAAGAAGAACCTGACTCAGTCCTTTCCGTGTTGGGCAGACCTCGAGAGTGCGTTGGCCGA
CCGAGATCGTCGAATCCAATACTGGAGGACGAAGCTCGAGGTGGCCGAACTCGAGAAGACCATGGTGGAAGTGAAGAAAG
ACCTGGCCATGGAAGCTCTCAGAGGTCGCGAGGTATGGTTCAACTCGTACCTCAGGAGCTGCTGCACGGCAATGGCTGGA
GTCTGCAGGAAACTCCGAGTTCCTCGCGGGAATCCCGAGGAGTCAGCGGCCAGATATATCTCGTGGTTGAATAGGACCTG
CACACAGCTCGAAGGGATCGGTAAGCGCATCGACGAGGCCCTAAAGCAGGAGTGTCATCGATCGAGCCGCTATGCCAGAG
GGCATGTGCTGGACTGTATCCGAGATCACCGCCCGCAGCTGCACCTCGAGTTCCTCCACGAAGGGTTCTCACGCTCTCGG
AGGACTCCCGCAGAGATTGACGATCAGGCACAGTCAATGGCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19035.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis