Browse Element(s) Details


OsAffx.30013.3.S1_x_at

Description tigr:9630.m04891
TID=OsAffx.30013.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4993011/11hypothetical protein
LOC_Os04g3341011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g157205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g377903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g260402/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein
LOC_Os02g49920OsAffx.12570.1.S1_at11/112+30494471..30495928very-long-chain fatty acid condensing enzyme, putative
LOC_Os02g49930OsAffx.30013.3.S1_x_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.3.S1_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.1.S1_x_at7/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.5.S1_x_at1/112+30501227..30502383hypothetical protein
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30013.3.S1_x_at--297--3537Chr12:8975879..8976074 (25 bp)
CATGCTGGGCATAAGTCTAAGGATG
LOC_Os12g15720
OsAffx.30013.3.S1_x_at--1079--4717Chr12:8975882..8976077 (25 bp)
GCTGGGCATAAGTCTAAGGATGCAG
LOC_Os12g15720
OsAffx.30013.3.S1_x_at--404--4673Chr09:15096391..15096415 (25 bp)
GCGTGGATATTGGATTCAGCTAGCT
NONE
OsAffx.30013.3.S1_x_at--295--7513Chr09:15096393..15096417 (25 bp)
GTGGATATTGGATTCAGCTAGCTCG
NONE
OsAffx.30013.3.S1_x_at--76--7953Chr09:15096395..15096419 (25 bp)
GGATATTGGATTCAGCTAGCTCGTT
NONE
OsAffx.30013.3.S1_x_at--236--10234Chr09:15096398..15096422 (25 bp)
TATTGGATTCAGCTAGCTCGTTTCA
NONE
OsAffx.30013.3.S1_x_at--901--10854Chr09:15096400..15096424 (25 bp)
TTGGATTCAGCTAGCTCGTTTCATG
NONE
OsAffx.30013.3.S1_x_at--837--7936Chr12:8976092..8976115 (24 bp)
GGATTCAGCTAGCTCGTTTCATGTG
LOC_Os12g15720
OsAffx.30013.3.S1_x_at--90--4816Chr12:8976102..8976126 (25 bp)
GCTCGTTTCATGTGACGCCAAGGAA
LOC_Os12g15720
OsAffx.30013.3.S1_x_at--474--8033Chr06:28538564..28538588 (25 bp)
GGAGTGGTTCTCTTCATATAAGTCT
NONE
OsAffx.30013.3.S1_x_at--994--7176Chr12:8976148..8976172 (25 bp)
GTCTGGTGAGTTTGGTTTTGTCTAC
LOC_Os12g15720
Target Sequence 
CATGCTGGGCATAAGTCTAAGGATGCAGAAGCGTGGATATTGGATTCAGCTAGCTCGTTTCATGTGACGCCAAGGAAGGA
GTGGTTCTCTTCATATAAGTCTGGTGAGTTTGGTTTTGTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30013.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis