Browse Element(s) Details


OsAffx.12570.1.S1_at

Description tigr:9630.m04890
TID=OsAffx.12570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chalcone and stilbene synthases, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4992011/11very-long-chain fatty acid condensing enzyme, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49880Os.50246.1.S1_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.2.S1_x_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.1.S2_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein
LOC_Os02g49920OsAffx.12570.1.S1_at11/112+30494471..30495928very-long-chain fatty acid condensing enzyme, putative
LOC_Os02g49930OsAffx.30013.3.S1_x_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.3.S1_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.1.S1_x_at7/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.5.S1_x_at1/112+30501227..30502383hypothetical protein
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12570.1.S1_at--438--8611Chr02:30495336..30495360 (25 bp)
TGGTGCGGACTCTGACCGGCGCCCA
LOC_Os02g49920
OsAffx.12570.1.S1_at--481--951Chr02:30495360..30495384 (25 bp)
AGGACGGTGCGTACCACTGCGTGTA
LOC_Os02g49920
OsAffx.12570.1.S1_at--1121--7731Chr02:30495365..30495389 (25 bp)
GGTGCGTACCACTGCGTGTACCAGG
LOC_Os02g49920
OsAffx.12570.1.S1_at--35--1951Chr02:30495396..30495420 (25 bp)
ACGGCCGCGGCAACGTTGGGATCAA
LOC_Os02g49920
OsAffx.12570.1.S1_at--857--3211Chr02:30495406..30495430 (25 bp)
CAACGTTGGGATCAACCTCTCCAAG
LOC_Os02g49920
OsAffx.12570.1.S1_at--4--971Chr02:30495429..30495453 (25 bp)
AGGACCTGATGAGCATCGCCGGCGA
LOC_Os02g49920
OsAffx.12570.1.S1_at--632--5831Chr02:30495431..30495455 (25 bp)
GACCTGATGAGCATCGCCGGCGACG
LOC_Os02g49920
OsAffx.12570.1.S1_at--879--4571Chr02:30495521..30495545 (25 bp)
GCGCTCTCCTTCATGGCGCGCAAGG
LOC_Os02g49920
OsAffx.12570.1.S1_at--604--871Chr02:30495533..30495557 (25 bp)
ATGGCGCGCAAGGTGCTGAGCGGGC
LOC_Os02g49920
OsAffx.12570.1.S1_at--980--8911Chr02:30495549..30495573 (25 bp)
TGAGCGGGCGGATCAAGCCCTACAT
LOC_Os02g49920
OsAffx.12570.1.S1_at--816--3211Chr02:30495757..30495781 (25 bp)
CAAGGGCCGCATGCGCAAGGGCGAC
LOC_Os02g49920
Target Sequence 
TGGTGCGGACTCTGACCGGCGCCCAGGACGGTGCGTACCACTGCGTGTACCAGGAGGAGGACGGCCGCGGCAACGTTGGG
ATCAACCTCTCCAAGGACCTGATGAGCATCGCCGGCGACGCGCTCAAGGCCAACATCACGACCATGGGCCCGCTGGTGCT
CCCGGCGTCGGAGCAGCTCCTCTTCGCGCTCTCCTTCATGGCGCGCAAGGTGCTGAGCGGGCGGATCAAGCCCTACATCC
CCGACTTCCGCACGGCGTTCGAGCACTTCTGCATCCACGCCGGCGGCCGCGCCGTGATCGACGAGCTGCAGCGCAGCCTC
ACCCTGTCGGACGAGCAGGTGGAGGCGTCCCGCATGACGCTCCACCGGTTCGGCAACACGTCGAGCAGCTCGCTCTGGTA
CGAGCTCGCCTACGTCGAGGCCAAGGGCCGCATGCGCAAGGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis