Browse Element(s) Details


OsAffx.32072.2.S1_at

Description tigr:9629.m03811
TID=OsAffx.32072.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3998010/11hypothetical protein
LOC_Os02g499101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39940NANA1+22852230..22856151hypothetical protein
LOC_Os01g39950NANA1+22860762..22861298hypothetical protein
LOC_Os01g39960Os.24901.1.A1_at11/111+22861853..22865590Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32072.2.S1_at--994--9456Chr10:3364839..3364859 (21 bp)
TCGGCGACATCACATCGCCAGAGGA
NONE
OsAffx.32072.2.S1_at--1089--4591NONE
GCGACATCACATCGCCAGAGGAAGA
NONE
OsAffx.32072.2.S1_at--962--2751Chr01:22872214..22872238 (25 bp)
AAGACCGCGGTGTAGAGGATGCAGT
LOC_Os01g39980
OsAffx.32072.2.S1_at--1011--1791Chr01:22872217..22872241 (25 bp)
ACCGCGGTGTAGAGGATGCAGTGCC
LOC_Os01g39980
OsAffx.32072.2.S1_at--288--651Chr01:22872232..22872256 (25 bp)
ATGCAGTGCCGAGAGGAGTCGCGCA
LOC_Os01g39980
OsAffx.32072.2.S1_at--705--9171Chr01:22872238..22872262 (25 bp)
TGCCGAGAGGAGTCGCGCAAAGAAC
LOC_Os01g39980
OsAffx.32072.2.S1_at--846--6171Chr01:22872244..22872268 (25 bp)
GAGGAGTCGCGCAAAGAACCGCTCT
LOC_Os01g39980
OsAffx.32072.2.S1_at--196--991Chr01:22872245..22872269 (25 bp)
AGGAGTCGCGCAAAGAACCGCTCTC
LOC_Os01g39980
OsAffx.32072.2.S1_at--225--1151Chr01:22872248..22872272 (25 bp)
AGTCGCGCAAAGAACCGCTCTCCAA
LOC_Os01g39980
OsAffx.32072.2.S1_at--761--9331Chr01:22872250..22872274 (25 bp)
TCGCGCAAAGAACCGCTCTCCAAAA
LOC_Os01g39980
OsAffx.32072.2.S1_at--517--5131Chr01:22872254..22872278 (25 bp)
GCAAAGAACCGCTCTCCAAAATCTT
LOC_Os01g39980
Target Sequence 
TCGGCGACATCACATCGCCAGAGGAAGAAGACCGCGGTGTAGAGGATGCAGTGCCGAGAGGAGTCGCGCAAAGAACCGCT
CTCCAAAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32072.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis