Browse Element(s) Details


Os.24901.1.A1_at

Description gb:AK066182.1
DB_XREF= gi:32976200
TID=Os.24901.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056J03, full insert sequence.
FL= gb:AK066182.1 gb:AK072015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3996011/11Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39920Os.45173.5.S1_x_at4/111+22839067..22839867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39930NANA1+22840133..22844500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39940NANA1+22852230..22856151hypothetical protein
LOC_Os01g39950NANA1+22860762..22861298hypothetical protein
LOC_Os01g39960Os.24901.1.A1_at11/111+22861853..22865590Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009765biological_processphotosynthesis, light harvesting
GO:0016117biological_processcarotenoid biosynthesis
GO:0016120biological_processcarotene biosynthesis
GO:0009507cellular_componentchloroplast
GO:0045435molecular_functionlycopene epsilon cyclase activity
GO:0045436molecular_functionlycopene beta cyclase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24901.1.A1_at--618--1471Chr01:22864726..22864750 (25 bp)
AGAATATTTGCCTGGAACCTCTCAA
LOC_Os01g39960
Os.24901.1.A1_at--811--2811Chr01:22864750..22864772 (23 bp)
AAGTTCCAGTCCATCAATGCTTGCA
LOC_Os01g39960
Os.24901.1.A1_at--921--2571Chr01:22864955..22864979 (25 bp)
AACGTCAACGATCATTCTTCCTTTT
LOC_Os01g39960
Os.24901.1.A1_at--918--7571Chr01:22864981..22865005 (25 bp)
GGGCTGGCTTTGATAATCCAACTGA
LOC_Os01g39960
Os.24901.1.A1_at--612--1851Chr01:22865009..22865033 (25 bp)
ACGAAGGCATTCAGACATTCTTTGA
LOC_Os01g39960
Os.24901.1.A1_at--82--11Chr01:22865037..22865058 (22 bp)
CTTTTTCCGGTTGCCCAAATGGATG
LOC_Os01g39960
Os.24901.1.A1_at--1062--6151Chr01:22865184..22865208 (25 bp)
GAGGATTCCTTGGTTCGACGCTTTC
LOC_Os01g39960
Os.24901.1.A1_at--812--5791Chr01:22865200..22865224 (25 bp)
GACGCTTTCTTCAGTGGATCTCATA
LOC_Os01g39960
Os.24901.1.A1_at--1006--6411Chr01:22865216..22865240 (25 bp)
GATCTCATACTCTTTGCATTCTACA
LOC_Os01g39960
Os.24901.1.A1_at--818--10571Chr01:22865234..22865258 (25 bp)
TTCTACATGTTCACAATTGCGCCGA
LOC_Os01g39960
Os.24901.1.A1_at--928--5831Chr01:22865323..22865347 (25 bp)
GACCTACCTGACCTTGTAAAACCAT
LOC_Os01g39960
Target Sequence 
AGAATATTTGCCTGGAACCTCTCAAAGTTCCAGTCCATCAATGCTTGCATGGAGAACATTATGGCCCCAAGAACGGAAAC
GTCAACGATCATTCTTCCTTTTTGGGCTGGCTTTGATAATCCAACTGAATAACGAAGGCATTCAGACATTCTTTGAAACC
TTTTTCCGGTTGCCCAAATGGATGTGGCGAGGATTCCTTGGTTCGACGCTTTCTTCAGTGGATCTCATACTCTTTGCATT
CTACATGTTCACAATTGCGCCGAACCAAATGCGAATGAACCTTGTCAGACATNTCCTCTNTGATCCGACCGGCTCAACGA
TGATCAAGACCTACCTGACCTTGTAAAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24901.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis