Browse Element(s) Details


OsAffx.32072.1.S1_x_at

Description tigr:9631.m03469
TID=OsAffx.32072.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3626010/11hypothetical protein
LOC_Os07g140209/11hypothetical protein
LOC_Os04g261007/11hypothetical protein
LOC_Os04g252207/11hypothetical protein
LOC_Os01g399806/11hypothetical protein
LOC_Os02g170304/11hypothetical protein
LOC_Os11g383704/11hypothetical protein
LOC_Os02g499103/11hypothetical protein
LOC_Os12g376802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36220NANA3+20042987..20047537retrotransposon protein, putative, unclassified
LOC_Os03g36239OsAffx.22848.4.S1_x_at3/113+20051092..20063644retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36239OsAffx.22848.4.S1_at2/113+20051092..20063644retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36260OsAffx.32072.1.S1_x_at10/113+20064540..20065623hypothetical protein
LOC_Os03g36260OsAffx.32072.1.S1_at10/113+20064540..20065623hypothetical protein
LOC_Os03g36260OsAffx.32072.2.S1_x_at5/113+20064540..20065623hypothetical protein
LOC_Os03g36264NANA3+20069462..20069797NA
LOC_Os03g36270OsAffx.20590.1.S1_at1/113+20075114..20078078retrotransposon protein, putative, unclassified
LOC_Os03g36279NANA3+20078309..20079883retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36290NANA3+20082970..20088173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36300NANA3+20088666..20092164retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32072.1.S1_x_at--644--4078Chr12:23097346..23097370 (25 bp)
CGAGCATCGCTTGGCAGCGTTGCGT
LOC_Os12g37680
OsAffx.32072.1.S1_x_at--236--10598Chr07:4747026..4747050 (25 bp)
TTCTCCTCGAGCAACCAGCCGATGA
NONE
OsAffx.32072.1.S1_x_at--1017--5159Chr10:3364729..3364753 (25 bp)
GCAACCAGCCGATGAGTTCGAAGAA
NONE
OsAffx.32072.1.S1_x_at--1097--53710Chr12:23097516..23097540 (25 bp)
GAAGAAGATGGTAACGTCGACGAGA
LOC_Os12g37680
OsAffx.32072.1.S1_x_at--872--2894Chr07:8004259..8004283 (25 bp)
AAGGTGACAACGTCCAGCGTCTCGG
LOC_Os07g14020
OsAffx.32072.1.S1_x_at--1128--1635Chr07:8004274..8004298 (25 bp)
AGCGTCTCGGCGACATCACAAGGCG
LOC_Os07g14020
OsAffx.32072.1.S1_x_at--336--2095Chr07:8004286..8004310 (25 bp)
ACATCACAAGGCGTCGTGGGATAGA
LOC_Os07g14020
OsAffx.32072.1.S1_x_at--1121--7933Chr07:8004995..8005019 (25 bp)
GGATCATTTTCCTCGTATTCTCGTA
LOC_Os07g14020
OsAffx.32072.1.S1_x_at--461--3593Chr07:8004999..8005023 (25 bp)
CATTTTCCTCGTATTCTCGTATATA
LOC_Os07g14020
OsAffx.32072.1.S1_x_at--697--113Chr07:8005011..8005035 (25 bp)
ATTCTCGTATATACGCGCAATCTGT
LOC_Os07g14020
OsAffx.32072.1.S1_x_at--1072--3493Chr07:8005037..8005061 (25 bp)
CATGGTGAGGCATCGATAAGAAATC
LOC_Os07g14020
Target Sequence 
CGAGCATCGCTTGGCAGCGTTGCGTCNTCTACGGACTCAGGCGGCTCGNNNANGNNNNTCCCCGNCAACTCCGACGAGAT
GGCTTNCGACGTAGCTGGAGCTNGTGACGCCTTGCGGGCACCGAGTAGTGNCNCTCCGGCCGGCNTTCTCCTCGAGCAAC
CAGCCGATGAGTTCGAAGAAGATGGTAACGTCGACGAGAGCGAGCGNACGTCAGTGATGTNGCGAAGAGGAGGCTGCGAC
CGGGAAGGTGACAACGTCCAGCGTCTCGGCGACATCACAAGGCGTCGTGGGATAGAGGTTGCGGCCGGCGAGGCAAGGAC
GTCGTGGCAGCAGNNANNNNTNTNNNNNNNGANNNNNNNCNNNNNNNNNNGNNNGNNNTCCTTTCCAAGTTGGAATGATA
CAGNGGGATCATTTTCCTCGTATTCTCGTATATACGCGCAATCTGTNCATGGTGAGGCATCGATAAGAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32072.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis