Browse Element(s) Details


Os.49687.1.S1_x_at

Description gb:AK101023.1
DB_XREF= gi:32986232
TID=Os.49687.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150C06, full insert sequence.
FL= gb:AK101023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3997011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39930NANA1+22840133..22844500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39940NANA1+22852230..22856151hypothetical protein
LOC_Os01g39950NANA1+22860762..22861298hypothetical protein
LOC_Os01g39960Os.24901.1.A1_at11/111+22861853..22865590Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49687.1.S1_x_at--139--5771Chr01:22868585..22868609 (25 bp)
GACGTCACCGTCAAGGACTGGCCCG
LOC_Os01g39970
Os.49687.1.S1_x_at--955--9671Chr01:22868589..22868613 (25 bp)
TCACCGTCAAGGACTGGCCCGTCGA
LOC_Os01g39970
Os.49687.1.S1_x_at--462--931Chr01:22868717..22868741 (25 bp)
AGGAACCTCGGACACGCCTACGAGG
LOC_Os01g39970
Os.49687.1.S1_x_at--778--1591Chr01:22868846..22868870 (25 bp)
AGCGGGAGGCCGTGTCAGTTATTTT
LOC_Os01g39970
Os.49687.1.S1_x_at--1094--8411Chr01:22868853..22868877 (25 bp)
GGCCGTGTCAGTTATTTTAGAGTCA
LOC_Os01g39970
Os.49687.1.S1_x_at--869--7111Chr01:22868859..22868883 (25 bp)
GTCAGTTATTTTAGAGTCACAGGAG
LOC_Os01g39970
Os.49687.1.S1_x_at--207--1011Chr01:22868884..22868908 (25 bp)
AGGGTGGAGTTCACACGGTACATTT
LOC_Os01g39970
Os.49687.1.S1_x_at--325--6071Chr01:22868890..22868914 (25 bp)
GAGTTCACACGGTACATTTACGGTC
LOC_Os01g39970
Os.49687.1.S1_x_at--1132--3091Chr01:22869001..22869025 (25 bp)
AATTTTGAGGTGTCCGAATGATTCT
LOC_Os01g39970
Os.49687.1.S1_x_at--326--6151Chr01:22869007..22869031 (25 bp)
GAGGTGTCCGAATGATTCTTTTTTC
LOC_Os01g39970
Os.49687.1.S1_x_at--660--10371Chr01:22869025..22869049 (25 bp)
TTTTTTCCTGGTTATACAGCAGAAA
LOC_Os01g39970
Target Sequence 
GACGTCACCGTCAAGGACTGGCCCGTCGACGACGCCATCGGCTTCGCCAAGCTCGCCCTCAAGTNCACCGAAATGCGCCG
GAGGGACCGCCCGGACCTCGCCACCGTCATCCTGCCGGAGCTCAACCGCCTCAGGAACCTCGGACACGCCTACGAGGCGC
GCATGANCNCCGCCGCCGCCGACGCCGNCGCGCACGCCCAGGACAACGTCGGCTCGCCGACGGTGGTGGGCGCGTCGTGG
AGAACGNCGNAGAGCTAAGCTAGCGGGAGGCCGTGTCAGTTATTTTAGAGTCACAGGAGAGGGTGGAGTTCACACGGTAC
ATTTACGGTCNTTTTTTGTNCGGTGTAAATCCTTAAATACCTTGGNTGTTTNGTACAGTTGNCAAAAAAAATTAACATGN
TNNNCGGTGGTTGGCTCAAAATTTTGAGGTGTCCGAATGATTCTTTTTTCCTGGTTATACAGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49687.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis