Browse Element(s) Details


Os.50246.1.S2_at

Description gb:AK120314.1
DB_XREF= gi:37989937
TID=Os.50246.1
CNT=2
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.50246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055L13, full insert sequence.
FL= gb:AK120314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4988011/11CCT motif family protein, expressed
LOC_Os12g396701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49850OsAffx.12569.1.S1_at11/112+30461715..30462567Chemocyanin precursor, putative, expressed
LOC_Os02g49860NANA2+30463622..30464149ABA induced plasma membrane protein PM 19, putative
LOC_Os02g49870Os.12058.1.S1_at11/112+30466113..30467246expressed protein
LOC_Os02g49880Os.50246.1.S1_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.2.S1_x_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.1.S2_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein
LOC_Os02g49920OsAffx.12570.1.S1_at11/112+30494471..30495928very-long-chain fatty acid condensing enzyme, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50246.1.S2_at--1130--3391Chr02:30467830..30467854 (25 bp)
CAGCATGTTGGCCAGTTTCTTTAGA
LOC_Os02g49880
Os.50246.1.S2_at--365--8431Chr02:30467821..30467845 (25 bp)
GGCCAGTTTCTTTAGATCAATTTCT
LOC_Os02g49880
Os.50246.1.S2_at--469--8971Chr02:30467756..30467780 (25 bp)
TGAAAGATTATATTGCCCCATGAAT
LOC_Os02g49880
Os.50246.1.S2_at--519--4531Chr02:30467742..30467766 (25 bp)
GCCCCATGAATAAATTAATCCCCTT
LOC_Os02g49880
Os.50246.1.S2_at--1070--1171Chr02:30467664..30467688 (25 bp)
AGTAGCTTGAATTTGCACGTTGCAA
LOC_Os02g49880
Os.50246.1.S2_at--794--2491Chr02:30467634..30467658 (25 bp)
AACAGTGCTCGATATCTCCTGGATA
LOC_Os02g49880
Os.50246.1.S2_at--982--10292Chr03:2923151..2923171 (21 bp)
TTTCTCTCAGAAATATTCGGGTTAT
NONE
Os.50246.1.S2_at--425--1794Chr12:24464027..24464289 (25 bp)
ACCGTTGATATTACGATCTCGCACA
LOC_Os12g39670
Os.50246.1.S2_at--1014--1871Chr02:30467514..30467538 (25 bp)
ACGATCTCGCACAATGAAAACGCAA
LOC_Os02g49880
Os.50246.1.S2_at--978--5511Chr02:30467499..30467523 (25 bp)
GAAAACGCAAGACGCTCGGTGTCGC
LOC_Os02g49880
Os.50246.1.S2_at--298--7751Chr02:30467482..30467506 (25 bp)
GGTGTCGCGCGGCAAATTATTACTA
LOC_Os02g49880
Target Sequence 
CAGCATGTTGGCCAGTTTCTTTAGATCAATTTCTGGGGATTGAATAAAGTACAATGTATGATGAACAATTTTCGTGAAAG
ATTATATTGCCCCATGAATAAATTAATCCCCTTTCAAAAATGATTATGCCTAAGGTAGGAGTTGTTACGATAGCAAAAAC
AGATGTAGTAGCTTGAATTTGCACGTTGCAACTTGCAACAGTGCTCGATATCTCCTGGATATATTGGTGAAATTTTTTTG
AAAATATGCCTTTTATTTTTTTCTCTCAGAAATATTCGGGTTATAATTTTATTTGCACAAATATACCGTTGATATTACGA
TCTCGCACAATGAAAACGCAAGACGCTCGGTGTCGCGCGGCAAATTATTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50246.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis