Browse Element(s) Details


Os.54883.1.S1_at

Description gb:AK107003.1
DB_XREF= gi:32992212
TID=Os.54883.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D01, full insert sequence.
FL= gb:AK107003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g499708/11ZIM motif family protein, expressed
LOC_Os12g167101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49930OsAffx.30013.3.S1_x_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.3.S1_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.1.S1_x_at7/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.5.S1_x_at1/112+30501227..30502383hypothetical protein
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed
LOC_Os02g49980Os.9111.1.S1_at10/112+30527553..30530507small GTP-binding protein domain containing protein, expressed
LOC_Os02g49986Os.7051.1.S1_at11/112+30533910..30535244ODORANT1 protein, putative, expressed
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein
LOC_Os02g50000OsAffx.24802.1.S1_at11/112+30548534..30550383GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54883.1.S1_at--788--9871Chr02:30524655..30524679 (25 bp)
TACTATTTTGTTTAACTTTCCTGTG
LOC_Os02g49970
Os.54883.1.S1_at--1036--2512Chr10:8498019..8498219 (25 bp)
AACTTTCCTGTGTAAACAATCATTT
NONE
Os.54883.1.S1_at--941--2231Chr02:30524683..30524707 (25 bp)
ACAATCATTTTGGTGCAGGGATACA
LOC_Os02g49970
Os.54883.1.S1_at--266--7671Chr02:30524700..30524724 (25 bp)
GGGATACAATATTGAGGGCCACTAT
LOC_Os02g49970
Os.54883.1.S1_at--1006--7551NONE
GGGCCACTATGAAATATTTCCTGTG
NONE
Os.54883.1.S1_at--969--2751Chr02:30524753..30524777 (25 bp)
AAGAGTTGGGAAGTGGGCACCTTAT
LOC_Os02g49970
Os.54883.1.S1_at--63--7611NONE
GGGCACCTTATGTTGAGTTGTAATC
NONE
Os.54883.1.S1_at--735--1731Chr02:30524933..30524957 (25 bp)
ACCTCTTGTAAATCGCCGTGCGGTG
LOC_Os02g49970
Os.54883.1.S1_at--465--532Chr02:30524944..30524968 (25 bp)
ATCGCCGTGCGGTGTTGTAACCTCA
LOC_Os02g49970
Os.54883.1.S1_at--349--42311Chr08:27599266..27599285 (20 bp)
CCGTTGTTTTTTCTCTCCTGCTTTG
NONE
Os.54883.1.S1_at--613--10671Chr02:30525038..30525062 (25 bp)
TTCCACATTAAATATTATGGGCTGG
LOC_Os02g49970
Target Sequence 
TACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTC
CTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAA
AGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTANACTGGAGCTAAGCGGAGGAGACCGCGCGGTA
CANATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCC
CGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATAT
TATGGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis