Browse Element(s) Details


OsAffx.24802.1.S1_at

Description tigr:9630.m04898
TID=OsAffx.24802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY085078 GDSL-motif lipasehydrolase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5000011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed
LOC_Os02g49980Os.9111.1.S1_at10/112+30527553..30530507small GTP-binding protein domain containing protein, expressed
LOC_Os02g49986Os.7051.1.S1_at11/112+30533910..30535244ODORANT1 protein, putative, expressed
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein
LOC_Os02g50000OsAffx.24802.1.S1_at11/112+30548534..30550383GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50010Os.14286.1.S1_at11/112+30551689..30555091APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os02g50020NANA2+30555341..30557543hypothetical protein
LOC_Os02g50030OsAffx.24804.1.S1_at10/112+30559979..30560890hypothetical protein
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein
LOC_Os02g50060Os.55658.1.S1_at11/112+30574059..30575000EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24802.1.S1_at--558--7451Chr02:30549814..30549927 (25 bp)
GGGCGTCTACTTTGTTCAGTACTTC
LOC_Os02g50000
OsAffx.24802.1.S1_at--185--3691Chr02:30549805..30549825 (21 bp)
CTTTGTTCAGTACTTCTCATTCGAC
LOC_Os02g50000
OsAffx.24802.1.S1_at--643--7011Chr02:30549796..30549820 (25 bp)
GTACTTCTCATTCGACCAGCAGATA
LOC_Os02g50000
OsAffx.24802.1.S1_at--145--5851Chr02:30549783..30549807 (25 bp)
GACCAGCAGATATCGTGCTTCGAGA
LOC_Os02g50000
OsAffx.24802.1.S1_at--709--251Chr02:30549774..30549798 (25 bp)
ATATCGTGCTTCGAGATGGTCAAGA
LOC_Os02g50000
OsAffx.24802.1.S1_at--52--952Chr08:24005958..24005982 (25 bp)
AGGAAGGTGGTGTTCAACTCGCTGC
NONE
OsAffx.24802.1.S1_at--772--2892Chr08:24005961..24005985 (25 bp)
AAGGTGGTGTTCAACTCGCTGCCGC
NONE
OsAffx.24802.1.S1_at--419--5132Chr08:24006022..24006046 (25 bp)
GCAACGGCAAGTGCCTGGACCACGT
NONE
OsAffx.24802.1.S1_at--634--8531Chr02:30549235..30549259 (25 bp)
TGGACCACGTGAACGGCTACGCCGT
LOC_Os02g50000
OsAffx.24802.1.S1_at--328--1911Chr02:30549229..30549253 (25 bp)
ACGTGAACGGCTACGCCGTGGAGTT
LOC_Os02g50000
OsAffx.24802.1.S1_at--719--8031Chr02:30549114..30549138 (25 bp)
GGAGCTCATCGTCCACCCCGAAAAA
LOC_Os02g50000
Target Sequence 
GGGCGTCTACTTTGTTCAGTACTTCTCATTCGACCAGCAGATATCGTGCTTCGAGATGGTCAAGAAGGCGATGATCGCCA
AGATCGGCAAGGAGGCCGCCGAGAGGCTGTACGGGCTCGGCGCGAGGAAGGTGGTGTTCAACTCGCTGCCGCCGCTGGGC
TGCATCCCGTCGCAGCGCGTCCACTCCGGCAACGGCAAGTGCCTGGACCACGTGAACGGCTACGCCGTGGAGTTCAACGC
GGCCGCCAAGAAGCTGCTCGACGGCATGAACGCCAAGCTGCCCGGCGCGCGGATGGCGCTCGCCGACTGCTACTCCGTCG
TCATGGAGCTCATCGTCCACCCCGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis