Browse Element(s) Details


Os.53973.1.S1_at

Description gb:AK101108.1
DB_XREF= gi:32986317
TID=Os.53973.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025E01, full insert sequence.
FL= gb:AK105446.1 gb:AK101108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5004011/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein
LOC_Os02g50000OsAffx.24802.1.S1_at11/112+30548534..30550383GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50010Os.14286.1.S1_at11/112+30551689..30555091APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os02g50020NANA2+30555341..30557543hypothetical protein
LOC_Os02g50030OsAffx.24804.1.S1_at10/112+30559979..30560890hypothetical protein
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein
LOC_Os02g50060Os.55658.1.S1_at11/112+30574059..30575000EF hand family protein, expressed
LOC_Os02g50070OsAffx.3024.1.S1_at11/112+30577458..30578162hypothetical protein
LOC_Os02g50080OsAffx.12572.1.S1_at11/112+30579896..30580315hypothetical protein
LOC_Os02g50090NANA2+30582283..30585399retrotransposon protein, putative, unclassified
LOC_Os02g50100Os.12016.1.S1_at11/112+30587626..30590282SET domain-containing protein, putative, expressed
LOC_Os02g50110Os.57343.1.S1_at11/112+30590531..30591132expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53973.1.S1_at--70--6131Chr02:30571049..30571073 (25 bp)
GAGTGGGCCGACGACTAGAACAACC
LOC_Os02g50040
Os.53973.1.S1_at--384--1431Chr02:30571065..30571089 (25 bp)
AGAACAACCCGCCAAAGTATATCAG
LOC_Os02g50040
Os.53973.1.S1_at--418--10171Chr02:30571082..30571106 (25 bp)
TATATCAGCTATACGGGCCTGGGCT
LOC_Os02g50040
Os.53973.1.S1_at--532--10791Chr02:30571108..30571132 (25 bp)
TTGTTTGTTTTGTCAGGGCCGAATC
LOC_Os02g50040
Os.53973.1.S1_at--916--5251Chr02:30571128..30571152 (25 bp)
GAATCGGGTGATTATTGCCTGGTTG
LOC_Os02g50040
Os.53973.1.S1_at--422--9191Chr02:30571143..30571167 (25 bp)
TGCCTGGTTGATTGATACTACTTGT
LOC_Os02g50040
Os.53973.1.S1_at--861--2831Chr02:30571208..30571232 (25 bp)
AAGTATAGTTAACTGCAGCCACCTC
LOC_Os02g50040
Os.53973.1.S1_at--327--4411Chr02:30571225..30571249 (25 bp)
GCCACCTCCTTTCATGCGAAAAATA
LOC_Os02g50040
Os.53973.1.S1_at--50--271Chr02:30571267..30571291 (25 bp)
ATAGGCTTTATTAGGCTGCTACTCC
LOC_Os02g50040
Os.53973.1.S1_at--330--3611Chr02:30571331..30571355 (25 bp)
CTTGTACTGCTATGGTTCAGCGAGT
LOC_Os02g50040
Os.53973.1.S1_at--1079--111Chr02:30571363..30571387 (25 bp)
ATATAAAGTGCACCACCGACGTTTC
LOC_Os02g50040
Target Sequence 
GAGTGGGCCGACGACTAGAACAACCCGCCAAAGTATATCAGCTATACGGGCCTGGGCTATTGTTTGTTTTGTCAGGGCCG
AATCGGGTGATTATTGCCTGGTTGATTGATACTACTTGTGTAACCAAATATAGTTAACTTCCTCTACAAAACCCCAACAA
AGTATAGTTAACTGCAGCCACCTCCTTTCATGCGAAAAATATCGGCCAGGAGGAATGCATAGGCTTTATTAGGCTGCTAC
TCCTACTAGCAATGTTGTAACAGTACTGTAGACATAGTTACACTTGTACTGCTATGGTTCAGCGAGTGGATTATATATAA
AGTGCACCACCGACGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis