Browse Element(s) Details


Os.57343.1.S1_at

Description gb:AK111335.1
DB_XREF= gi:32996544
TID=Os.57343.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F02, full insert sequence.
FL= gb:AK111335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein
LOC_Os02g50060Os.55658.1.S1_at11/112+30574059..30575000EF hand family protein, expressed
LOC_Os02g50070OsAffx.3024.1.S1_at11/112+30577458..30578162hypothetical protein
LOC_Os02g50080OsAffx.12572.1.S1_at11/112+30579896..30580315hypothetical protein
LOC_Os02g50090NANA2+30582283..30585399retrotransposon protein, putative, unclassified
LOC_Os02g50100Os.12016.1.S1_at11/112+30587626..30590282SET domain-containing protein, putative, expressed
LOC_Os02g50110Os.57343.1.S1_at11/112+30590531..30591132expressed protein
LOC_Os02g50120NANA2+30607894..30609043retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57343.1.S1_at--1143--4151Chr02:30591078..30591102 (25 bp)
CGCCATCGTCTCTGTAGACAGAATA
LOC_Os02g50110
Os.57343.1.S1_at--400--9031Chr02:30590952..30590976 (25 bp)
TGCACAGCCAGGTGAGGCGGATCAA
LOC_Os02g50110
Os.57343.1.S1_at--524--1391Chr02:30590895..30590919 (25 bp)
AGACGTACCAGCACCAGGTGTCGGA
LOC_Os02g50110
Os.57343.1.S1_at--175--1811Chr02:30590746..30590770 (25 bp)
ACCCCATTGCCGGATTGGATGGAGA
LOC_Os02g50110
Os.57343.1.S1_at--566--4632Chr01:35058181..35058200 (20 bp)
GCGATCTCCTTGAGTTTTCTTCTCT
NONE
Os.57343.1.S1_at--485--1211Chr02:30590694..30590718 (25 bp)
AGTTTTCTTCTCTCGTCATGGTTAG
LOC_Os02g50110
Os.57343.1.S1_at--451--9511Chr02:30590684..30590708 (25 bp)
TCTCGTCATGGTTAGACCCGACTGA
LOC_Os02g50110
Os.57343.1.S1_at--231--1391Chr02:30590671..30590695 (25 bp)
AGACCCGACTGATTGAGCAGCCGAA
LOC_Os02g50110
Os.57343.1.S1_at--67--10771Chr02:30590659..30590683 (25 bp)
TTGAGCAGCCGAACATGAGCAGATG
LOC_Os02g50110
Os.57343.1.S1_at--130--1011Chr02:30590627..30590651 (25 bp)
AGGATCATTCTTTGGCTGTACTGCG
LOC_Os02g50110
Os.57343.1.S1_at--166--7011Chr02:30590610..30590634 (25 bp)
GTACTGCGTACATTAATCTTTTTAT
LOC_Os02g50110
Target Sequence 
CGCCATCGTCTCTGTAGACAGAATAAAAAAAAATCAAGAGGGGGAGGAAGCCGAGGGAGGTTTTCGCTGAGATGGAGATG
GGTAGGGACGTGGATGCAGGGCAGCAGCAGAGGCGGCTGGTGGTGGTGCACAGCCAGGTGAGGCGGATCAAGCAGGAGGA
GGGGGAGAAGGTGAAGGTGGACGAGACGTACCAGCACCAGGTGTCGGAGATGCGGCGGATGGTGGTGCTCCGGGACATGG
AGGCGAGGCAGCGCTCCCGCTCGCCGCTCGGGAGGGCCGCCCGCCCGGCGATCTCCATCGGCGGCGACTCGTGAGGCGTA
CGTACGTGCGCCACCCCATTGCCGGATTGGATGGAGACGTACGGGCGCCGCCGCGATCTCCTTGAGTTTTCTTCTCTCGT
CATGGTTAGACCCGACTGATTGAGCAGCCGAACATGAGCAGATGTTTTTTTAGGATCATTCTTTGGCTGTACTGCGTACA
TTAATCTTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis