Browse Element(s) Details


OsAffx.12572.1.S1_at

Description tigr:9630.m04906
TID=OsAffx.12572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5008011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50010Os.14286.1.S1_at11/112+30551689..30555091APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os02g50020NANA2+30555341..30557543hypothetical protein
LOC_Os02g50030OsAffx.24804.1.S1_at10/112+30559979..30560890hypothetical protein
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein
LOC_Os02g50060Os.55658.1.S1_at11/112+30574059..30575000EF hand family protein, expressed
LOC_Os02g50070OsAffx.3024.1.S1_at11/112+30577458..30578162hypothetical protein
LOC_Os02g50080OsAffx.12572.1.S1_at11/112+30579896..30580315hypothetical protein
LOC_Os02g50090NANA2+30582283..30585399retrotransposon protein, putative, unclassified
LOC_Os02g50100Os.12016.1.S1_at11/112+30587626..30590282SET domain-containing protein, putative, expressed
LOC_Os02g50110Os.57343.1.S1_at11/112+30590531..30591132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12572.1.S1_at--1102--1771Chr02:30580223..30580247 (25 bp)
ACCGCCCTCGGATAGGCTGGATGTT
LOC_Os02g50080
OsAffx.12572.1.S1_at--892--4171Chr02:30580219..30580243 (25 bp)
CCCTCGGATAGGCTGGATGTTCATC
LOC_Os02g50080
OsAffx.12572.1.S1_at--130--9451Chr02:30580216..30580240 (25 bp)
TCGGATAGGCTGGATGTTCATCCAT
LOC_Os02g50080
OsAffx.12572.1.S1_at--189--911Chr02:30580210..30580234 (25 bp)
AGGCTGGATGTTCATCCATCGTTCT
LOC_Os02g50080
OsAffx.12572.1.S1_at--555--10611Chr02:30580189..30580213 (25 bp)
TTCTGGAAATGGGAGACCGAGCCGG
LOC_Os02g50080
OsAffx.12572.1.S1_at--370--2951Chr02:30580182..30580206 (25 bp)
AATGGGAGACCGAGCCGGAGCGCGG
LOC_Os02g50080
OsAffx.12572.1.S1_at--183--8111Chr02:30580123..30580147 (25 bp)
GGACGACACCTCTCGGCCGCGGAGA
LOC_Os02g50080
OsAffx.12572.1.S1_at--397--5331Chr02:30580100..30580124 (25 bp)
GATAAGGGAATTCTACGGGTGCGGG
LOC_Os02g50080
OsAffx.12572.1.S1_at--570--4751Chr02:30580093..30580117 (25 bp)
GAATTCTACGGGTGCGGGAAGGCCA
LOC_Os02g50080
OsAffx.12572.1.S1_at--871--4131Chr02:30579975..30579999 (25 bp)
CGCTGCATGCGGTGTTCGACGAGTA
LOC_Os02g50080
OsAffx.12572.1.S1_at--760--4751Chr02:30579974..30579998 (25 bp)
GCTGCATGCGGTGTTCGACGAGTAC
LOC_Os02g50080
Target Sequence 
ACCGCCCTCGGATAGGCTGGATGTTCATCCATCGTTCTGGAAATGGGAGACCGAGCCGGAGCGCGGCCGCGTCTTCCGCT
GCTTCGACACCGACGGCGACGGACGACACCTCTCGGCCGCGGAGATAAGGGAATTCTACGGGTGCGGGAAGGCCAAGGAG
ACGGTCGCCGCGGCGGATAGGCAGAACGGGGACGGGTTCCTCAGCATCGAGGAGCTCCGCGCGGTGATGGAGGACGGGGA
TTCGGAGGCGCTGCATGCGGTGTTCGACGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis