Browse Element(s) Details


Os.14286.1.S1_at

Description gb:AK065796.1
DB_XREF= gi:32975814
TID=Os.14286.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041F02, full insert sequence.
FL= gb:AK104342.1 gb:AK065796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5001011/11APO protein 3, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49980Os.9111.1.S1_at10/112+30527553..30530507small GTP-binding protein domain containing protein, expressed
LOC_Os02g49986Os.7051.1.S1_at11/112+30533910..30535244ODORANT1 protein, putative, expressed
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein
LOC_Os02g50000OsAffx.24802.1.S1_at11/112+30548534..30550383GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50010Os.14286.1.S1_at11/112+30551689..30555091APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os02g50020NANA2+30555341..30557543hypothetical protein
LOC_Os02g50030OsAffx.24804.1.S1_at10/112+30559979..30560890hypothetical protein
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein
LOC_Os02g50060Os.55658.1.S1_at11/112+30574059..30575000EF hand family protein, expressed
LOC_Os02g50070OsAffx.3024.1.S1_at11/112+30577458..30578162hypothetical protein
LOC_Os02g50080OsAffx.12572.1.S1_at11/112+30579896..30580315hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14286.1.S1_at--1129--3331Chr02:30554507..30554531 (25 bp)
CACGGAATTGTGGTGCCTTCAAACA
LOC_Os02g50010
Os.14286.1.S1_at--684--7311Chr02:30554569..30554593 (25 bp)
GTGCTCGATGACTTAATACCTCCTA
LOC_Os02g50010
Os.14286.1.S1_at--729--9971Chr02:30554585..30554609 (25 bp)
TACCTCCTAGATATGTGTGGCACCT
LOC_Os02g50010
Os.14286.1.S1_at--625--2331Chr02:30554643..30554667 (25 bp)
AAAGAGTTTCTATGGGCAGGCACCT
LOC_Os02g50010
Os.14286.1.S1_at--610--5011Chr02:30554658..30554682 (25 bp)
GCAGGCACCTGCGATTGTGGAGATA
LOC_Os02g50010
Os.14286.1.S1_at--34--6211Chr02:30554764..30554788 (25 bp)
GAGGCCGAAATGGTCGTCTGAACAA
LOC_Os02g50010
Os.14286.1.S1_at--820--1391Chr02:30554789..30554813 (25 bp)
AGACGTTTCTATTGTCACCTCAAGC
LOC_Os02g50010
Os.14286.1.S1_at--623--9671Chr02:30554803..30554827 (25 bp)
TCACCTCAAGCTCCAGTTTGTCTGA
LOC_Os02g50010
Os.14286.1.S1_at--291--10691Chr02:30554820..30554844 (25 bp)
TTGTCTGACCAGAGGTTCACAGTTT
LOC_Os02g50010
Os.14286.1.S1_at--1077--10791Chr02:30554906..30554930 (25 bp)
TTGTTTGTACCATATGCTCGCTATC
LOC_Os02g50010
Os.14286.1.S1_at--330--7991Chr02:30554961..30554985 (25 bp)
GGATGTTTCTTACAGCAGTTCGAGA
LOC_Os02g50010
Target Sequence 
CACGGAATTGTGGTGCCTTCAAACACCAGCAGAGGAATGGGCAGCATGGATGGCAAGCAGCAGTGCTCGATGACTTAATA
CCTCCTAGATATGTGTGGCACCTGCCAGAATCCGGGGAGGACTTGCAGAGGGATCTAAAGAGTTTCTATGGGCAGGCACC
TGCGATTGTGGAGATATGTGTTCAGGCTGGTGCAAAGGTGCCGGAGAAGTACAAAGCCACAATGAGACTAGATATAGGAA
TTCCAACAAGTTTGAGAGAGGCCGAAATGGTCGTCTGAACAAAGACGTTTCTATTGTCACCTCAAGCTCCAGTTTGTCTG
ACCAGAGGTTCACAGTTTTACTCATGTATATACCAGGAAGGCAGGAAATTAGCTCAAACAGAATTTGTCTAGGTCTGTAT
TGTTTGTACCATATGCTCGCTATCATTTACCAAATTCTTCTTTGTATGAGGCATGGATGTTTCTTACAGCAGTTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis