Browse Element(s) Details


Os.9111.1.S1_at

Description gb:AK111722.1
DB_XREF= gi:37988385
TID=Os.9111.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029C05, full insert sequence.
FL= gb:AK111722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4998010/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed
LOC_Os02g49980Os.9111.1.S1_at10/112+30527553..30530507small GTP-binding protein domain containing protein, expressed
LOC_Os02g49986Os.7051.1.S1_at11/112+30533910..30535244ODORANT1 protein, putative, expressed
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein
LOC_Os02g50000OsAffx.24802.1.S1_at11/112+30548534..30550383GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50010Os.14286.1.S1_at11/112+30551689..30555091APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os02g50020NANA2+30555341..30557543hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9111.1.S1_at--1063--6571Chr02:30528839..30528863 (25 bp)
GATTCCGGACCATGTGGGAGCGCTA
LOC_Os02g49980
Os.9111.1.S1_at--50--9191NONE
TGCCGTGGAGTTTCTGCAATCCTAT
NONE
Os.9111.1.S1_at--543--9091Chr02:30528122..30528146 (25 bp)
TGCTGACCGGGATAGCATTCCGATA
LOC_Os02g49980
Os.9111.1.S1_at--1108--6551Chr02:30528050..30528074 (25 bp)
GATTCCTTTACTAGTCCTTGGCAAC
LOC_Os02g49980
Os.9111.1.S1_at--279--8571Chr02:30527892..30528012 (25 bp)
TGGTTGATCAACTAGGCCTGGAATT
LOC_Os02g49980
Os.9111.1.S1_at--154--971Chr02:30527862..30527886 (25 bp)
AGGACCGGGAAGTTTGCTGCTACAT
LOC_Os02g49980
Os.9111.1.S1_at--1069--712Chr03:17338709..17338732 (23 bp)
ATGATCTCTTGCAAGGACTCTGTAA
NONE
Os.9111.1.S1_at--351--6611Chr02:30527797..30527821 (25 bp)
GATTGGCTTATCAAGCACTCCAGAA
LOC_Os02g49980
Os.9111.1.S1_at--284--771Chr02:30527753..30527777 (25 bp)
ATGTCTATCACTTGATGCGTGCTGA
LOC_Os02g49980
Os.9111.1.S1_at--227--451Chr02:30527665..30527689 (25 bp)
ATCTATGGTTTCTCGTTGGTGTCAC
LOC_Os02g49980
Os.9111.1.S1_at--603--8111Chr02:30527555..30527579 (25 bp)
GGACGTGCTGTATCGTTGTTTTTAA
LOC_Os02g49980
Target Sequence 
GATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTATATGTGGTGGATGCTGCTGACCGGGATAGC
ATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAA
CAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGATAAAGGACCGGGAAG
TTTGCTGCTACATGATCTCTTGCAAGGACTCTGTAAACATAGATGTTGTCATTGATTGGCTTATCAAGCACTCCAGAACA
GCAAAGTAGGGTTGTGTATGTCTATCACTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCAGTTTTATGGTCCA
AAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAG
CATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTATGGACGTGCTGTATCGTTGTTTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis