Browse Element(s) Details


OsAffx.19698.1.S1_at

Description tigr:9640.m01550
TID=OsAffx.19698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1592010/11laccase family protein, putative
LOC_Os12g155303/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15870NANA12+9041818..9044860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15880NANA12+9046373..9048187retrotransposon protein, putative, unclassified
LOC_Os12g15890NANA12+9048638..9049348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15900OsAffx.20387.1.S1_x_at2/1112+9049601..9052389transposon protein, putative, unclassified
LOC_Os12g15900OsAffx.8166.1.S1_at1/1112+9049601..9052389transposon protein, putative, unclassified
LOC_Os12g15910OsAffx.22004.1.S1_at2/1112+9053044..9056084retrotransposon protein, putative, unclassified
LOC_Os12g15910OsAffx.31069.1.S1_x_at1/1112+9053044..9056084retrotransposon protein, putative, unclassified
LOC_Os12g15920OsAffx.19698.1.S1_at10/1112+9066427..9074526laccase family protein, putative
LOC_Os12g15920OsAffx.22442.1.S1_x_at2/1112+9066427..9074526laccase family protein, putative
LOC_Os12g15920Os.55580.1.S1_at1/1112+9066427..9074526laccase family protein, putative
LOC_Os12g15930Os.46012.1.S1_at1/1112+9080854..9081348hypothetical protein
LOC_Os12g15939NANA12+9082857..9083543NA
LOC_Os12g15950OsAffx.23366.2.S1_s_at1/1112+9085271..9088871transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15950Os.14765.1.S1_at1/1112+9085271..9088871transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15960OsAffx.19699.1.S1_at11/1112+9095141..9097127hypothetical protein
LOC_Os12g15960OsAffx.25317.1.S1_at1/1112+9095141..9097127hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19698.1.S1_at--624--5872Chr12:9073379..9073403 (25 bp)
GAGCGACAACGCGACGATGCAGTTC
LOC_Os12g15920
OsAffx.19698.1.S1_at--212--4612Chr12:9073389..9073413 (25 bp)
GCGACGATGCAGTTCACGACCAAGT
LOC_Os12g15920
OsAffx.19698.1.S1_at--741--7312Chr12:9073458..9073482 (25 bp)
GTGCTGCAGAACACGCGGCTGATCG
LOC_Os12g15920
OsAffx.19698.1.S1_at--959--8831Chr12:9073477..9073501 (25 bp)
TGATCGCGAAAGAGAGCCACCCGAT
LOC_Os12g15920
OsAffx.19698.1.S1_at--485--4351Chr12:9073493..9073517 (25 bp)
CCACCCGATGCATATCCATGGATTT
LOC_Os12g15920
OsAffx.19698.1.S1_at--92--8571Chr12:9073511..9073535 (25 bp)
TGGATTTAACTTCTTCATCCTCGCG
LOC_Os12g15920
OsAffx.19698.1.S1_at--769--9611Chr12:9073525..9073549 (25 bp)
TCATCCTCGCGCAAGGGTTCGGCAA
LOC_Os12g15920
OsAffx.19698.1.S1_at--879--9451Chr12:9073595..9073619 (25 bp)
TCAGGAACGTAACACCATCGCCGTG
LOC_Os12g15920
OsAffx.19698.1.S1_at--854--3611Chr12:9073646..9073666 (21 bp)
CTTCGTCGCCGACAATCCTGGGATG
LOC_Os12g15920
OsAffx.19698.1.S1_at--1031--3891NONE
CTGGGATGTGGTACATGCACTGCCA
NONE
OsAffx.19698.1.S1_at--814--5791Chr12:9074419..9074443 (25 bp)
GACGCTCATATTAGCCTTGGGCTGG
LOC_Os12g15920
Target Sequence 
GAGCGACAACGCGACGATGCAGTTCACGACCAAGTCGACCAAGGTGAAGACGCTGCGGTACAACGAGACGGTGGAGATGG
TGCTGCAGAACACGCGGCTGATCGCGAAAGAGAGCCACCCGATGCATATCCATGGATTTAACTTCTTCATCCTCGCGCAA
GGGTTCGGCAACTACGACAAGAGGAGGGCGGAGAGGAGGTTCAACCTCGTCGACCCTCAGGAACGTAACACCATCGCCGT
GCCCACCGGCGGCTGGGCTGTCATCCGCTTCGTCGCCGACAATCCTGGGATGTGGTACATGCACTGCCACTTCGACGCTC
ATATTAGCCTTGGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis