Browse Element(s) Details


Os.54398.1.S1_x_at

Description gb:AK103894.1
DB_XREF= gi:32989103
TID=Os.54398.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150F13, full insert sequence.
FL= gb:AK110951.1 gb:AK103894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1555011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15520Os.54597.1.S1_x_at11/1112+8856763..8858062expressed protein
LOC_Os12g15530Os.34112.1.S1_at11/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.19698.1.S1_at3/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.7606.1.S1_at1/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15540OsAffx.19690.1.S1_at10/1112+8877465..8877714hypothetical protein
LOC_Os12g15550Os.54398.1.S1_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15550Os.54398.1.S1_x_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15560NANA12+8893439..8893989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15570NANA12+8895019..8899712retrotransposon protein, putative, unclassified
LOC_Os12g15580NANA12+8900137..8900964Zinc knuckle family protein
LOC_Os12g15590Os.16798.1.S1_at11/1112+8903836..8912514DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54398.1.S1_x_at--891--9491Chr12:8881394..8881418 (25 bp)
TCTCCCGCGTGGTGGTGACCGACGA
LOC_Os12g15550
Os.54398.1.S1_x_at--413--4091Chr12:8881550..8881574 (25 bp)
CGACGTCGATTTGCCGGTGCGTGAA
LOC_Os12g15550
Os.54398.1.S1_x_at--90--1051Chr12:8881753..8881777 (25 bp)
AGGTGCGTTGCCAACTGCTCGTGCG
LOC_Os12g15550
Os.54398.1.S1_x_at--618--4931Chr12:8881814..8881838 (25 bp)
GCATTATGTGGACAAAGCCTTTCGT
LOC_Os12g15550
Os.54398.1.S1_x_at--529--1671Chr12:8881829..8881853 (25 bp)
AGCCTTTCGTCGATTTACGTTTCAT
LOC_Os12g15550
Os.54398.1.S1_x_at--475--10471Chr12:8881843..8881867 (25 bp)
TTACGTTTCATCGACAATGGCCAGG
LOC_Os12g15550
Os.54398.1.S1_x_at--875--2951Chr12:8881858..8881882 (25 bp)
AATGGCCAGGACATCTACCAGCGGC
LOC_Os12g15550
Os.54398.1.S1_x_at--925--9971Chr12:8881873..8881897 (25 bp)
TACCAGCGGCTAGCGAAATCTGAAA
LOC_Os12g15550
Os.54398.1.S1_x_at--853--3132Chr12:8881913..8881937 (25 bp)
AATTTTGATTTGTTGGTGTTCCATA
LOC_Os12g15550
Os.54398.1.S1_x_at--1037--7411Chr12:8881928..8881952 (25 bp)
GTGTTCCATAAATGTGGTGGCTTTA
LOC_Os12g15550
Os.54398.1.S1_x_at--416--7711Chr12:8881943..8881967 (25 bp)
GGTGGCTTTATATATCCTTAGGGAA
LOC_Os12g15550
Target Sequence 
TCTCCCGCGTGGTGGTGACCGACGACGGCGTGGTCCGGCGGCTGGTGTGGGACGCGGCGACGCGGGCGTGGAAGACGTTC
TTCCAGGCGCCGGGGGACTCCTGCGACAGCTACGCCAAGTGCGGCGCGTTCGGCCTGTGCGACAGCAACGCCGGCGCGAC
GTCGATTTGCCGGTGCGTGAAGGGGTTCAGCCCGGCGTCGCCGGCGGAGTGGTCGATGAGGGAGTACTCCGGCGGGTGCC
GCCGGGACGTGGCGCTCGACTGCGGCACGGACGGGTTCGCCGTGCTGCGCGGGGTGAAGCTCCCTGACACGCGCAACGCG
TCGGTGGACATGGGCGTCAAGCTGGACGAGTGCAGGGCGAGGTGCGTTGCCAACTGCTCGTGCGTGGCGTATGCCGCGGC
GGACTTGAGCGGCGGTGGGTGCATTATGTGGACAAAGCCTTTCGTCGATTTACGTTTCATCGACAATGGCCAGGACATCT
ACCAGCGGCTAGCGAAATCTGAAATAGGTAATTTAACCTAATTTTGATTTGTTGGTGTTCCATAAATGTGGTGGCTTTAT
ATATCCTTAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54398.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis