Browse Element(s) Details


OsAffx.19690.1.S1_at

Description tigr:9640.m01511
TID=OsAffx.19690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1554010/11hypothetical protein
LOC_Os01g316291/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15510OsAffx.31754.1.S1_x_at11/1112+8853707..8855107hypothetical protein
LOC_Os12g15520Os.54597.1.S1_x_at11/1112+8856763..8858062expressed protein
LOC_Os12g15530Os.34112.1.S1_at11/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.19698.1.S1_at3/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.7606.1.S1_at1/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15540OsAffx.19690.1.S1_at10/1112+8877465..8877714hypothetical protein
LOC_Os12g15550Os.54398.1.S1_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15550Os.54398.1.S1_x_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15560NANA12+8893439..8893989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15570NANA12+8895019..8899712retrotransposon protein, putative, unclassified
LOC_Os12g15580NANA12+8900137..8900964Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19690.1.S1_at--158--251Chr12:8877495..8877519 (25 bp)
ATATCTTGCCAGTCCGAGCTTGAGA
LOC_Os12g15540
OsAffx.19690.1.S1_at--330--10171Chr12:8877496..8877520 (25 bp)
TATCTTGCCAGTCCGAGCTTGAGAT
LOC_Os12g15540
OsAffx.19690.1.S1_at--461--7251Chr12:8877506..8877530 (25 bp)
GTCCGAGCTTGAGATCATACTCTAC
LOC_Os12g15540
OsAffx.19690.1.S1_at--939--4071Chr12:8877509..8877533 (25 bp)
CGAGCTTGAGATCATACTCTACCAA
LOC_Os12g15540
OsAffx.19690.1.S1_at--1040--4911Chr12:8877512..8877536 (25 bp)
GCTTGAGATCATACTCTACCAAGGG
LOC_Os12g15540
OsAffx.19690.1.S1_at--889--7591Chr12:8877540..8877564 (25 bp)
GGGCATTTGCCCATGGCATGGGACC
LOC_Os12g15540
OsAffx.19690.1.S1_at--22--4351Chr12:8877550..8877574 (25 bp)
CCATGGCATGGGACCGAGAATCCGA
LOC_Os12g15540
OsAffx.19690.1.S1_at--849--8492Chr12:8877553..8877577 (25 bp)
TGGCATGGGACCGAGAATCCGAGAT
LOC_Os12g15540
OsAffx.19690.1.S1_at--248--3511Chr12:8877556..8877580 (25 bp)
CATGGGACCGAGAATCCGAGATGCT
LOC_Os12g15540
OsAffx.19690.1.S1_at--604--4231Chr12:8877563..8877583 (21 bp)
CCGAGAATCCGAGATGCTGGGTGTT
LOC_Os12g15540
OsAffx.19690.1.S1_at--584--4071NONE
CGAGATGCTGGGTGTTGGAAGGAAT
NONE
Target Sequence 
ATATCTTGCCAGTCCGAGCTTGAGATCATACTCTACCAAGGGGAAGGGCATTTGCCCATGGCATGGGACCGAGAATCCGA
GATGCTGGGTGTTGGAAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis