Browse Element(s) Details


Os.54597.1.S1_x_at

Description gb:AK106104.1
DB_XREF= gi:32991313
TID=Os.54597.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C10, full insert sequence.
FL= gb:AK106104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1552011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed
LOC_Os12g15480NANA12+8840680..8841244hypothetical protein
LOC_Os12g15490OsAffx.19689.1.S1_at11/1112+8843464..8843865hypothetical protein
LOC_Os12g15500NANA12+8846627..8848388retrotransposon protein, putative, LINE subclass
LOC_Os12g15510OsAffx.31754.1.S1_x_at11/1112+8853707..8855107hypothetical protein
LOC_Os12g15520Os.54597.1.S1_x_at11/1112+8856763..8858062expressed protein
LOC_Os12g15530Os.34112.1.S1_at11/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.19698.1.S1_at3/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.7606.1.S1_at1/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15540OsAffx.19690.1.S1_at10/1112+8877465..8877714hypothetical protein
LOC_Os12g15550Os.54398.1.S1_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15550Os.54398.1.S1_x_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54597.1.S1_x_at--439--4691Chr12:8857547..8857571 (25 bp)
GCGGAGACCTATGATGCCAGTGCTG
LOC_Os12g15520
Os.54597.1.S1_x_at--404--5291Chr12:8857647..8857671 (25 bp)
GAATGGTGATCAACGTTGTGCTCTA
LOC_Os12g15520
Os.54597.1.S1_x_at--421--10831Chr12:8857662..8857686 (25 bp)
TTGTGCTCTATATGCATTGCCGCGC
LOC_Os12g15520
Os.54597.1.S1_x_at--233--5211Chr12:8857721..8857745 (25 bp)
GAATTCGCCAACTCGTATGTCTTCC
LOC_Os12g15520
Os.54597.1.S1_x_at--167--3351Chr12:8857789..8857813 (25 bp)
CACGGTGTGGCCATGATTGACTATC
LOC_Os12g15520
Os.54597.1.S1_x_at--865--2031Chr12:8857808..8857832 (25 bp)
ACTATCGCCGCGGTGGTGAGTTTGC
LOC_Os12g15520
Os.54597.1.S1_x_at--575--8771Chr12:8857862..8857886 (25 bp)
TGTATAACTGTGTGCGCATCTCTGT
LOC_Os12g15520
Os.54597.1.S1_x_at--85--471Chr12:8857879..8857903 (25 bp)
ATCTCTGTTCTTCTGTTCATAGGTG
LOC_Os12g15520
Os.54597.1.S1_x_at--172--291Chr12:8857897..8857921 (25 bp)
ATAGGTGTCTCTTCAATTGTGCAAA
LOC_Os12g15520
Os.54597.1.S1_x_at--868--9891Chr12:8857935..8857959 (25 bp)
TACTCTTCTATTAGCCTTAGGCCTT
LOC_Os12g15520
Os.54597.1.S1_x_at--860--2151Chr12:8857961..8857985 (25 bp)
ACAGCCTTAGCCCTGGAATATATAA
LOC_Os12g15520
Target Sequence 
GCGGAGACCTATGATGCCAGTGCTGGGTGGGCCGGCATGGCGCCGGTGGTGGTGAAGGCGGTGGTCGGAACGGCGGTGCT
GGTGGTTCTGATGCTTTATGGAATGGTGATCAACGTTGTGCTCTATATGCATTGCCGCGCGCTTCACGGGGAGCTCACGG
GGGAGATCTACAACGAATTCGCCAACTCGTATGTCTTCCTGCCCTTTGACGAGGGCAAGGATCGGCATGTAGTGTCAGTG
GTCACGGTGTGGCCATGATTGACTATCGCCGCGGTGGTGAGTTTGCGAATCCAAAGAACAGTTTTGACCACATCATGTAT
AACTGTGTGCGCATCTCTGTTCTTCTGTTCATAGGTGTCTCTTCAATTGTGCAAACGTTTGGATCAAATACTCTTCTATT
AGCCTTAGGCCTTTACAGCCTTAGCCCTGGAATATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54597.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis