Browse Element(s) Details


Os.3451.1.S1_at

Description gb:AK062220.1
DB_XREF= gi:32972238
TID=Os.3451.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B07, full insert sequence.
FL= gb:AK072798.1 gb:AK064874.1 gb:AK062220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1547011/11Serine carboxypeptidase I precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein
LOC_Os12g15460Os.51992.1.S1_at4/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15460Os.56227.1.S1_s_at2/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed
LOC_Os12g15480NANA12+8840680..8841244hypothetical protein
LOC_Os12g15490OsAffx.19689.1.S1_at11/1112+8843464..8843865hypothetical protein
LOC_Os12g15500NANA12+8846627..8848388retrotransposon protein, putative, LINE subclass
LOC_Os12g15510OsAffx.31754.1.S1_x_at11/1112+8853707..8855107hypothetical protein
LOC_Os12g15520Os.54597.1.S1_x_at11/1112+8856763..8858062expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3451.1.S1_at--1143--7431Chr12:8827914..8827938 (25 bp)
GTGTGTACCTTATACCGGGACTGAA
LOC_Os12g15470
Os.3451.1.S1_at--715--831Chr12:8827887..8827911 (25 bp)
ATGGACCAGATCTTTGGGCTACGGA
LOC_Os12g15470
Os.3451.1.S1_at--318--6571Chr12:8827856..8827880 (25 bp)
GATTCATGGAGACCGTGGCACCTGA
LOC_Os12g15470
Os.3451.1.S1_at--758--8171Chr12:8827630..8827854 (25 bp)
TGGCCAAGTTTCTGGGTACACCCAA
LOC_Os12g15470
Os.3451.1.S1_at--775--671Chr12:8827601..8827625 (25 bp)
ATGAACATGGCCTCACCTTTGCTAC
LOC_Os12g15470
Os.3451.1.S1_at--904--3891Chr12:8827366..8827390 (25 bp)
CTGGGCACACTGTTCCTGAATACAA
LOC_Os12g15470
Os.3451.1.S1_at--423--431Chr12:8827332..8827356 (25 bp)
ATCATTGGCTTTCTATAGCCGCTGG
LOC_Os12g15470
Os.3451.1.S1_at--891--4711Chr12:8827312..8827336 (25 bp)
GCTGGCTTGCTGGTTCTAAATTGTA
LOC_Os12g15470
Os.3451.1.S1_at--951--2991Chr12:8827287..8827311 (25 bp)
AATGCTTGTGAATCCGACATCCAAT
LOC_Os12g15470
Os.3451.1.S1_at--943--5391Chr12:8827257..8827281 (25 bp)
GAAGCATACATATCCATACAGCCAT
LOC_Os12g15470
Os.3451.1.S1_at--638--5391Chr12:8827089..8827113 (25 bp)
GAAGCTTACTGTGCTGTAACATCAA
LOC_Os12g15470
Target Sequence 
GTGTGTACCTTATACCGGGACTGAAGCATGGACCAGATCTTTGGGCTACGGAGTTATTGATTCATGGAGACCGTGGCACC
TGAATGGCCAAGTTTCTGGGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGGGTGCTGGGCACACT
GTTCCTGAATACAAACCACAAGAATCATTGGCTTTCTATAGCCGCTGGCTTGCTGGTTCTAAATTGTAAATGCTTGTGAA
TCCGACATCCAATAATGGGAAGCATACATATCCATACAGCCATGAATCAGATAAAGGTTGATACAAAGATAATATAAAAA
AACTACAAACCAATTTAGAAAGCCACATTTATTTCAGAATAGTTGGTGCCAACACCATGTTGTATGTTCTTTTATGCAAA
CAGTAGATCATTCATCATTATTTGTGGAAGCTTACTGTGCTGTAACATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis