Browse Element(s) Details


OsAffx.31753.4.S1_at

Description tigr:9640.m01501
TID=OsAffx.31753.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1544011/11AC transposase, putative
LOC_Os01g588301/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein
LOC_Os12g15460Os.51992.1.S1_at4/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15460Os.56227.1.S1_s_at2/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31753.4.S1_at--447--5271Chr12:8813314..8813338 (25 bp)
GAATGAGGGTGATTCATGTGGCAAT
LOC_Os12g15440
OsAffx.31753.4.S1_at--301--6131Chr12:8813310..8813334 (25 bp)
GAGGGTGATTCATGTGGCAATAGAT
LOC_Os12g15440
OsAffx.31753.4.S1_at--730--7711Chr12:8813308..8813332 (25 bp)
GGGTGATTCATGTGGCAATAGATAA
LOC_Os12g15440
OsAffx.31753.4.S1_at--1124--9612Chr12:8813301..8813325 (25 bp)
TCATGTGGCAATAGATAAGATCCGT
LOC_Os12g15440
OsAffx.31753.4.S1_at--845--5591Chr12:8813135..8813159 (25 bp)
GAAATATTGTCTTACAAAGCTGTCT
LOC_Os12g15440
OsAffx.31753.4.S1_at--333--10211Chr12:8813131..8813155 (25 bp)
TATTGTCTTACAAAGCTGTCTTCAA
LOC_Os12g15440
OsAffx.31753.4.S1_at--1125--10811Chr12:8813129..8813153 (25 bp)
TTGTCTTACAAAGCTGTCTTCAATA
LOC_Os12g15440
OsAffx.31753.4.S1_at--255--7151Chr12:8813127..8813151 (25 bp)
GTCTTACAAAGCTGTCTTCAATAGC
LOC_Os12g15440
OsAffx.31753.4.S1_at--761--4731Chr12:8813117..8813141 (25 bp)
GCTGTCTTCAATAGCTATACCTCTG
LOC_Os12g15440
OsAffx.31753.4.S1_at--483--3871Chr12:8813116..8813140 (25 bp)
CTGTCTTCAATAGCTATACCTCTGA
LOC_Os12g15440
OsAffx.31753.4.S1_at--673--7131Chr12:8813114..8813138 (25 bp)
GTCTTCAATAGCTATACCTCTGAAA
LOC_Os12g15440
Target Sequence 
GAATGAGGGTGATTCATGTGGCAATAGATAAGATCCGTGAGATCCTAAAGTACATTGAGCATTCACCCTCACGCATTCAA
GCGTTTAATTCAATTGCTTCTAGTAAAAGTCTTCCTCCAAAATCTGGTTTCGCTCTTGATGTACCAACCCATTGGAACTC
GACCTTCAAGATGATTAGAGAAATATTGTCTTACAAAGCTGTCTTCAATAGCTATACCTCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31753.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis