Browse Element(s) Details


Os.51992.1.S1_at

Description gb:AK064488.1
DB_XREF= gi:32974506
TID=Os.51992.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B11, full insert sequence.
FL= gb:AK064488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g154604/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein
LOC_Os12g15460Os.51992.1.S1_at4/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15460Os.56227.1.S1_s_at2/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed
LOC_Os12g15480NANA12+8840680..8841244hypothetical protein
LOC_Os12g15490OsAffx.19689.1.S1_at11/1112+8843464..8843865hypothetical protein
LOC_Os12g15500NANA12+8846627..8848388retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51992.1.S1_at--380--2331Chr12:8821291..8821315 (25 bp)
AAAGAGAGGTCCAGCTTTCCAGGCT
LOC_Os12g15460
Os.51992.1.S1_at--224--4871Chr12:8821278..8821302 (25 bp)
GCTTTCCAGGCTATAATGCTCCAAA
LOC_Os12g15460
Os.51992.1.S1_at--1149--611Chr12:8821263..8821287 (25 bp)
ATGCTCCAAAGTTCATGTTTGCCAC
LOC_Os12g15460
Os.51992.1.S1_at--567--6851Chr12:8821247..8821271 (25 bp)
GTTTGCCACAACCATATTCTGGATT
LOC_Os12g15460
Os.51992.1.S1_at--369--8291Chr12:8821115..8821139 (25 bp)
GGCTTGAACTACACTCATGTTGGAT
NONE
Os.51992.1.S1_at--543--7311Chr12:8821073..8821097 (25 bp)
GTGCTGTGATGCATGCAAGTCCTGA
NONE
Os.51992.1.S1_at--844--5151Chr12:8820990..8821014 (25 bp)
GCAAGCTTCTTTTGGATTTTCCCTC
NONE
Os.51992.1.S1_at--241--7551Chr12:8820886..8820910 (25 bp)
GGGCCAAGTCCTGCAAGATGTAAAT
NONE
Os.51992.1.S1_at--29--6431Chr12:8820838..8820862 (25 bp)
GATCTTCTATTCTCTGGACACAGTA
NONE
Os.51992.1.S1_at--871--6851Chr12:8820810..8820834 (25 bp)
GTATTCCATTTGCTACGGTTGTTTT
NONE
Os.51992.1.S1_at--362--5491Chr12:8820722..8820746 (25 bp)
GAACAGGAGCTCGATTTCTTTACAC
NONE
Target Sequence 
AAAGAGAGGTCCAGCTTTCCAGGCTATAATGCTCCAAAGTTCATGTTTGCCACAACCATATTCTGGATTCTTCTGCTAAA
GAAGATGTTCTACAGTGAGAGAGCAATTCTTGAAAGTTGAACTTTGGTGACGATGGAGCACGGCTGGGGCCTACTCTGGA
GTTTAAACTATCTTAAGGCTTGAACTACACTCATGTTGGATTATGCAAATTGATTGGGGTGCTGTGATGCATGCAAGTCC
TGAAGATAACTTGCCAGCAAAAGAAATCAACTCAGATTGCTGACCATGGCAACCACTCAATGCAAGCTTCTTTTGGATTT
TCCCTCGGTCTTAGGCACCTAATGTTGATGCTTCAGAAGGCAGTGCATTTTTCAAAGACATTATTTCCTCTTGTAAATCG
AGTGAGGGCCAAGTCCTGCAAGATGTAAATTTATACTTGGACGCAAGTGTGTAGATCTTCTATTCTCTGGACACAGTATT
TGTATTCCATTTGCTACGGTTGTTTTTATTTATGTTTGGCACCATTTTATTTTCTTCTCATGATCCATGTAATAGTTTGA
ATTCTATTTGAACAGGAGCTCGATTTCTTTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis