Browse Element(s) Details


OsAffx.19689.1.S1_at

Description tigr:9640.m01506
TID=OsAffx.19689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein
LOC_Os12g15460Os.51992.1.S1_at4/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15460Os.56227.1.S1_s_at2/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed
LOC_Os12g15480NANA12+8840680..8841244hypothetical protein
LOC_Os12g15490OsAffx.19689.1.S1_at11/1112+8843464..8843865hypothetical protein
LOC_Os12g15500NANA12+8846627..8848388retrotransposon protein, putative, LINE subclass
LOC_Os12g15510OsAffx.31754.1.S1_x_at11/1112+8853707..8855107hypothetical protein
LOC_Os12g15520Os.54597.1.S1_x_at11/1112+8856763..8858062expressed protein
LOC_Os12g15530Os.34112.1.S1_at11/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.19698.1.S1_at3/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g15530OsAffx.7606.1.S1_at1/1112+8866947..8872123retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19689.1.S1_at--720--7571Chr12:8843517..8843541 (25 bp)
GGGCTCTCCTACAATCAGAGATGAG
LOC_Os12g15490
OsAffx.19689.1.S1_at--929--3051Chr12:8843529..8843553 (25 bp)
AATCAGAGATGAGCCCCCAGGAGGA
LOC_Os12g15490
OsAffx.19689.1.S1_at--559--4531Chr12:8843541..8843565 (25 bp)
GCCCCCAGGAGGACTACTGCGACAA
LOC_Os12g15490
OsAffx.19689.1.S1_at--1017--2011Chr12:8843553..8843577 (25 bp)
ACTACTGCGACAAGATAAACTTACA
LOC_Os12g15490
OsAffx.19689.1.S1_at--1039--6151Chr12:8843566..8843590 (25 bp)
GATAAACTTACAATACCCCGCGTCA
LOC_Os12g15490
OsAffx.19689.1.S1_at--490--9831Chr12:8843568..8843592 (25 bp)
TAAACTTACAATACCCCGCGTCAAG
LOC_Os12g15490
OsAffx.19689.1.S1_at--518--4331Chr12:8843618..8843729 (25 bp)
CCATCCCCGTCATCTGGAACTGTAA
LOC_Os12g15490
OsAffx.19689.1.S1_at--126--8151Chr12:8843720..8843744 (25 bp)
GGAACTGTAATTATGGCGACGCCGG
LOC_Os12g15490
OsAffx.19689.1.S1_at--776--7071Chr12:8843726..8843750 (25 bp)
GTAATTATGGCGACGCCGGCAACAA
LOC_Os12g15490
OsAffx.19689.1.S1_at--1021--5791Chr12:8843737..8843761 (25 bp)
GACGCCGGCAACAAGAAGGCCGATA
LOC_Os12g15490
OsAffx.19689.1.S1_at--572--891Chr12:8843753..8843834 (25 bp)
AGGCCGATAGATGGTTGATTGCTTC
LOC_Os12g15490
Target Sequence 
GGGCTCTCCTACAATCAGAGATGAGCCCCCAGGAGGACTACTGCGACAAGATAAACTTACAATACCCCGCGTCAAGGGCG
CCGAGTGCTACGGCCGGGGCGCCATCCCCGTCATCTGGAACTGTAATTATGGCGACGCCGGCAACAAGAAGGCCGATAGA
TGGTTGATTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis