Browse Element(s) Details


Os.56227.1.S1_s_at

Description gb:AK109654.1
DB_XREF= gi:32994863
TID=Os.56227.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E04, full insert sequence.
FL= gb:AK109654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4811011/11expressed protein
LOC_Os12g154602/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed
LOC_Os07g48100Os.4627.1.S1_x_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48100Os.4627.2.S1_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48110Os.56227.1.S1_s_at11/117+28730154..28730624expressed protein
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56227.1.S1_s_at--605--3711Chr07:28730186..28730210 (25 bp)
CTAGCTCTCATAAACGACAACCTCA
LOC_Os07g48110
Os.56227.1.S1_s_at--60--2391Chr07:28730197..28730221 (25 bp)
AAACGACAACCTCAGATCGGATTTG
LOC_Os07g48110
Os.56227.1.S1_s_at--976--5611Chr07:28730201..28730225 (25 bp)
GACAACCTCAGATCGGATTTGGCAT
LOC_Os07g48110
Os.56227.1.S1_s_at--49--9651Chr07:28730208..28730232 (25 bp)
TCAGATCGGATTTGGCATTATGCCA
LOC_Os07g48110
Os.56227.1.S1_s_at--468--211Chr07:28730217..28730241 (25 bp)
ATTTGGCATTATGCCACAGAGTCTT
LOC_Os07g48110
Os.56227.1.S1_s_at--578--9512Chr08:3231394..3231418 (25 bp)
TCTACCAGAGCGTGCCCGGGCGGCG
NONE
Os.56227.1.S1_s_at--595--6475Chr12:4601358..4601382 (25 bp)
GATACATTTGGATCTAAGAACTTGT
NONE
Os.56227.1.S1_s_at--905--7956Chr12:4601367..4601391 (25 bp)
GGATCTAAGAACTTGTGATTCATTG
NONE
Os.56227.1.S1_s_at--1009--6634Chr08:3231682..3231706 (25 bp)
GTTGTAGTTTTTTGAGAATTTGTGA
NONE
Os.56227.1.S1_s_at--665--6176Chr09:4427164..4427189 (23 bp)
GAGGATGATACTTTGATTTTGGGAT
NONE
Os.56227.1.S1_s_at--868--3676Chr08:3231737..3231758 (22 bp)
CTTTGATTTTGGGATATTTGGGATA
NONE
Target Sequence 
CTAGCTCTCATAAACGACAACCTCAGATCGGATTTGGCATTATGCCACAGAGTCTTCTCCTCTCCCCTCTCCCCTTCCCC
TCTCCTCCTCCTCCTCCTCCTCCTCCTCTACCAGAGCGTGCCCGGGCGGCGGCTGGCGGCGGGCCGCGGGCGGCAGGGAG
CGCGGCGATGGCGGGAGCTGGCGGCCGGTGGCGCCCTCTCCTCTGCCGGAGGGGGGAGGCGGCAGCGGCAGCACAATTTT
CTTTTTTTTTCCCGAATTTTTGATACATTTGGATCTAAGAACTTGTGATTCATTGGATCTGTGATGTATTTCTTTAAGAA
TTTGAGTTGTAGTTTTTTGAGAATTTGTGATGTGAATGATTCATTGATTTGAGGATGATACTTTGATTTTGGGATATTTG
GGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56227.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis