Browse Element(s) Details


Os.17787.1.S1_at

Description gb:AK111746.1
DB_XREF= gi:37988409
TID=Os.17787.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047E15, full insert sequence.
FL= gb:AK111746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g480906/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed
LOC_Os07g48100Os.4627.1.S1_x_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48100Os.4627.2.S1_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48110Os.56227.1.S1_s_at11/117+28730154..28730624expressed protein
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17787.1.S1_at--214--7551Chr07:28710419..28710443 (25 bp)
GTGGCCAAGGTCTGCGTGTTCAAGA
LOC_Os07g48090
Os.17787.1.S1_at--709--1691Chr07:28710544..28710568 (25 bp)
AGCCATCTGAGCTGCCGACGAGAGG
LOC_Os07g48090
Os.17787.1.S1_at--1130--4031Chr07:28710580..28710604 (25 bp)
CGTTGCCGCGTGCTTGCAAATTGCA
LOC_Os07g48090
Os.17787.1.S1_at--647--6731Chr07:28710615..28710639 (25 bp)
GTTCTTGTGTTGTTCAGTGTAACCG
LOC_Os07g48090
Os.17787.1.S1_at--343--9811Chr07:28710634..28710658 (25 bp)
TAACCGTGTGAGTGATGTCTCCCGT
LOC_Os07g48090
Os.17787.1.S1_at--625--9491Chr07:28710651..28710675 (25 bp)
TCTCCCGTCGGCGAATTGTTTGGGT
LOC_Os07g48090
Os.17787.1.S1_at--927--6191Chr07:28710759..28710783 (25 bp)
GAGGCAAAAAATTCCCTGCTATGAT
NONE
Os.17787.1.S1_at--577--8111NONE
GGACGAAAATCTTGACTATCTAGTG
NONE
Os.17787.1.S1_at--1109--5771NONE
GACGAGAGCTGACGTTCGACTTTTA
NONE
Os.17787.1.S1_at--837--5691NONE
GACTTTTACTCACTCGATCGATTGG
NONE
Os.17787.1.S1_at--531--7571NONE
GGGCGATAAACAGTGGACAATCTTA
NONE
Target Sequence 
GTGGCCAAGGTCTGCGTGTTCAAGATCGCCGACGCGGTGTCCGTCGTCGAGGTGGTGAAAGGCTACGGCGCCGAGGCCGC
CCGGTTCTGGAAGGCCAGGCTCGAGCCGGCGATGAAGCCTCCGGCAGCCATCTGAGCTGCCGACGAGAGGGTGAGCTGGT
TCGTTGCCGCGTGCTTGCAAATTGCAATCGAGATTTGTTCTTGTGTTGTTCAGTGTAACCGTGTGAGTGATGTCTCCCGT
CGGCGAATTGTTTGGGTTTTTTTGGGATGTATTTGTTCATGGACGGCGTCATGGAGGTGGTATGTAAGCACGATTTGGTG
ATGTCTGGGCTGGAAAATAAGAGGCAAAAAATTCCCTGCTATGATGAGCGGACAAGAATACAAGATACTGAAGTTCGTCG
AATCGTCGGCGTCAGATGACACAGGATGGACGAAAATCTTGACTATCTAGTGGACGAGAGCTGACGTTCGACTTTTACTC
ACTCGATCGATTGGGCGATAAACAGTGGACAATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis